Browse Element(s) Details


OsAffx.5740.1.S1_at

Description tigr:9636.m00711
TID=OsAffx.5740.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0770011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07630OsAffx.29084.2.S1_x_at11/118+4277482..4277988expressed protein
LOC_Os08g07640NANA8+4280063..4280476hypothetical protein
LOC_Os08g07650OsAffx.29085.1.S1_at11/118+4282901..4283271hypothetical protein
LOC_Os08g07660OsAffx.29084.2.S1_x_at1/118+4284192..4284740hypothetical protein
LOC_Os08g07670OsAffx.16881.1.S1_at11/118+4287651..4288169hypothetical protein
LOC_Os08g07670OsAffx.16881.1.S1_x_at11/118+4287651..4288169hypothetical protein
LOC_Os08g07680OsAffx.16882.1.S1_at11/118+4290881..4291393hypothetical protein
LOC_Os08g07690Os.51406.1.S1_at9/118+4294380..4295067expressed protein
LOC_Os08g07700OsAffx.5740.1.S1_at11/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07700OsAffx.14566.1.S1_at1/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07710OsAffx.29086.1.S1_at11/118+4305440..4305727hypothetical protein
LOC_Os08g07720OsAffx.29087.1.S1_x_at11/118+4309816..4312201Transferase family protein, expressed
LOC_Os08g07730OsAffx.16883.1.S1_x_at11/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730OsAffx.13115.1.S1_at2/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730Os.46622.1.S1_x_at1/118+4319543..4323424Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5740.1.S1_at--647--8031Chr08:4298115..4298139 (25 bp)
GGAGATCCGCAACCCGTACACCAAG
LOC_Os08g07700
OsAffx.5740.1.S1_at--500--971Chr08:4298092..4298116 (25 bp)
AGGAGCGCCACTGGCTCGGCACCTT
LOC_Os08g07700
OsAffx.5740.1.S1_at--744--5051Chr08:4297947..4297971 (25 bp)
GCAGCACGCGCTGTCTCCGGCAGTG
LOC_Os08g07700
OsAffx.5740.1.S1_at--1042--7231Chr08:4297896..4297920 (25 bp)
GTCGCCGCTGTACGATGATGATTAC
LOC_Os08g07700
OsAffx.5740.1.S1_at--88--9951Chr08:4297886..4297910 (25 bp)
TACGATGATGATTACCTGTCGCCGG
LOC_Os08g07700
OsAffx.5740.1.S1_at--929--4051Chr08:4297884..4297908 (25 bp)
CGATGATGATTACCTGTCGCCGGCG
LOC_Os08g07700
OsAffx.5740.1.S1_at--167--1871Chr08:4297831..4297855 (25 bp)
ACGACGAGTCGCTGACGATCGCGAC
LOC_Os08g07700
OsAffx.5740.1.S1_at--42--8951Chr08:4297819..4297843 (25 bp)
TGACGATCGCGACCATCCTGCAGAG
LOC_Os08g07700
OsAffx.5740.1.S1_at--217--9271Chr08:4297804..4297828 (25 bp)
TCCTGCAGAGCTTCCAGTATCAGCA
LOC_Os08g07700
OsAffx.5740.1.S1_at--420--1371Chr08:4297798..4297822 (25 bp)
AGAGCTTCCAGTATCAGCAGAGCGT
LOC_Os08g07700
OsAffx.5740.1.S1_at--367--10691Chr08:4297793..4297817 (25 bp)
TTCCAGTATCAGCAGAGCGTCCCAC
LOC_Os08g07700
Target Sequence 
GGAGATCCGCAACCCGTACACCAAGGAGCGCCACTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCCGTCGCCTACG
ACCTCTCCGCCATCTCCATCTCCGGCGCCGCCGCCGCGCGCACCAACTTCCTCTACCCCGACATGCACCACCACCACCCT
TCGCCGCCGCAGCACGCGCTGTCTCCGGCAGTGCCACCGCCGCCACCGCCGCCGCCGCCGTCGCCGCTGTACGATGATGA
TTACCTGTCGCCGGCGGCGGCGGAGGAGGAAGTGGAGGCCGGCGACGACGAGTCGCTGACGATCGCGACCATCCTGCAGA
GCTTCCAGTATCAGCAGAGCGTCCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis