Browse Element(s) Details


OsAffx.5809.1.S1_x_at

Description tigr:9636.m01383
TID=OsAffx.5809.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g367191/11Lipoxygenase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36670OsAffx.19198.1.S1_at11/1111+21147686..21149007hypothetical protein
LOC_Os11g36670OsAffx.19197.1.S1_at2/1111+21147686..21149007hypothetical protein
LOC_Os11g36690OsAffx.31329.1.S1_at11/1111+21164045..21165849hypothetical protein
LOC_Os11g36700NANA11+21170341..21171655glycosyltransferase, putative
LOC_Os11g36719Os.6031.1.S1_at10/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.27810.1.S1_x_at2/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.27810.1.S1_at2/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719Os.52574.2.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.20020.1.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.5809.1.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36740OsAffx.31331.1.S1_at10/1111+21186130..21189758expressed protein
LOC_Os11g36760OsAffx.7315.1.S1_at11/1111+21204163..21206712hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5809.1.S1_x_at--93--3972Chr08:8346271..8346295 (25 bp)
CGGAGGGCACCAGAAGGTAGAGAAG
NONE
OsAffx.5809.1.S1_x_at--1065--52713Chr10:12090079..12090099 (21 bp)
GAAGGCGACGGCGATTCTTACTTAC
NONE
OsAffx.5809.1.S1_x_at--203--8392Chr08:8346295..8346319 (25 bp)
GGCGACGGCGATTCTTACTTACACT
NONE
OsAffx.5809.1.S1_x_at--28--9751Chr08:8346310..8346334 (25 bp)
TACTTACACTTACACGATGACAGAC
NONE
OsAffx.5809.1.S1_x_at--438--9851Chr08:8346314..8346338 (25 bp)
TACACTTACACGATGACAGACGGCG
NONE
OsAffx.5809.1.S1_x_at--836--1312Chr08:8346344..8346368 (25 bp)
AGATGGCCGGCGATGAGCTTGAAAA
NONE
OsAffx.5809.1.S1_x_at--787--8011Chr08:8347008..8347032 (25 bp)
GGAGGAGATCGGCACGGCTGCACAG
NONE
OsAffx.5809.1.S1_x_at--293--1294Chr11:14588321..14588341 (21 bp)
AGATCGGCACGGCTGCACAGGCTCG
NONE
OsAffx.5809.1.S1_x_at--876--3311Chr08:8347028..8347052 (25 bp)
CACAGGCTCGGCCTCTGTCCAGAGG
NONE
OsAffx.5809.1.S1_x_at--277--4811Chr08:8347033..8347057 (25 bp)
GCTCGGCCTCTGTCCAGAGGTTGAA
NONE
OsAffx.5809.1.S1_x_at--738--79118Chr12:20324710..20325125 (25 bp)
GGTTGAAGAAGGAATTGAGCTCTGA
NONE
Target Sequence 
CGGAGGGCACCAGAAGGTAGAGAAGGCGACGGCGATTCTTACTTACACTTACACGATGACAGACGGCGACGGAAGATGGC
CGGCGATGAGCTTGAAAAGGCGGCGAGAGGAGATTGAGAGGATTCCATTCCCGCAACTAATTTGGAAAAAGGAGCAACGG
GGAGGCCGGATTGGAGGAGGAGATCGGCACGGCTGCACAGGCTCGGCCTCTGTCCAGAGGTTGAAGAAGGAATTGAGCTC
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5809.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis