Browse Element(s) Details


OsAffx.5886.1.S1_at

Description tigr:9636.m02085
TID=OsAffx.5886.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2132011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21240OsAffx.17094.1.S1_at10/118+12679595..12680504hypothetical protein
LOC_Os08g21250OsAffx.5885.1.S1_at11/118+12682219..12682986retrotransposon, putative, centromere-specific
LOC_Os08g21260NANA8+12690205..12690609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21280Os.52609.1.S1_at2/118+12693399..12697190retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21280OsAffx.22947.2.S1_x_at1/118+12693399..12697190retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21290Os.46715.1.S1_x_at2/118+12700347..12700895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21290Os.46715.1.S1_at1/118+12700347..12700895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21300Os.33601.3.S1_x_at3/118+12701822..12703610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21300Os.49936.2.A1_at1/118+12701822..12703610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21320OsAffx.5886.1.S1_at11/118+12704826..12705059hypothetical protein
LOC_Os08g21330Os.49203.1.S1_at11/118+12705751..12714144formamidopyrimidine-DNA glycosylase family protein, expressed
LOC_Os08g21350Os.5878.1.S1_at10/118+12719182..12727478cig3, putative, expressed
LOC_Os08g21350OsAffx.25413.1.S1_at1/118+12719182..12727478cig3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5886.1.S1_at--757--8131Chr08:12705004..12705028 (25 bp)
GGACATGGCCATGGGCTATTGTCCC
LOC_Os08g21320
OsAffx.5886.1.S1_at--1151--871Chr08:12705000..12705024 (25 bp)
ATGGCCATGGGCTATTGTCCCAGTG
LOC_Os08g21320
OsAffx.5886.1.S1_at--916--10211Chr08:12704988..12705012 (25 bp)
TATTGTCCCAGTGGTGCGGGTCAAT
LOC_Os08g21320
OsAffx.5886.1.S1_at--336--3472Chr08:12704980..12705004 (25 bp)
CAGTGGTGCGGGTCAATTTGTTGCT
LOC_Os08g21320
OsAffx.5886.1.S1_at--408--211Chr08:12704965..12704989 (25 bp)
ATTTGTTGCTGTTTGAAGGTGGAGA
LOC_Os08g21320
OsAffx.5886.1.S1_at--1109--3951Chr08:12704935..12704959 (25 bp)
CGGAGAGCTCGGACTTGTCGGTGGA
LOC_Os08g21320
OsAffx.5886.1.S1_at--144--6271Chr08:12704910..12704934 (25 bp)
GATGTGGACCGAAGATGGCGACGAC
LOC_Os08g21320
OsAffx.5886.1.S1_at--1128--8371Chr08:12704894..12704918 (25 bp)
GGCGACGACGTCCAGGTTTATCCAG
LOC_Os08g21320
OsAffx.5886.1.S1_at--335--5792Chr08:12704891..12704915 (25 bp)
GACGACGTCCAGGTTTATCCAGATG
LOC_Os08g21320
OsAffx.5886.1.S1_at--1027--1012Chr08:12704881..12704905 (25 bp)
AGGTTTATCCAGATGGTGCCACTTC
LOC_Os08g21320
OsAffx.5886.1.S1_at--848--6251Chr08:12704870..12704894 (25 bp)
GATGGTGCCACTTCCCGACGTATGG
LOC_Os08g21320
Target Sequence 
GGACATGGCCATGGGCTATTGTCCCAGTGGTGCGGGTCAATTTGTTGCTGTTTGAAGGTGGAGAGCCGGCGGAGAGCTCG
GACTTGTCGGTGGAGATGTGGACCGAAGATGGCGACGACGTCCAGGTTTATCCAGATGGTGCCACTTCCCGACGTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis