Browse Element(s) Details


OsAffx.5895.1.S1_at

Description tigr:9636.m02137
TID=OsAffx.5895.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2188011/11retrotransposon, putative, centromere-specific
LOC_Os01g239103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21849OsAffx.5893.1.S1_at11/118+13038889..13039542hypothetical protein
LOC_Os08g21860NANA8+13043004..13049666retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21869OsAffx.5894.1.S1_at10/118+13057395..13059449hypothetical protein
LOC_Os08g21869Os.31535.1.A1_at1/118+13057395..13059449hypothetical protein
LOC_Os08g21880OsAffx.5895.1.S1_at11/118+13061539..13067290retrotransposon, putative, centromere-specific
LOC_Os08g21890OsAffx.25476.2.S1_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21890OsAffx.8356.1.S1_x_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21890Os.50889.1.S1_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21890OsAffx.15695.1.S1_x_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21890OsAffx.20020.1.S1_x_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21900OsAffx.17102.1.S1_at11/118+13079078..13080109hypothetical protein
LOC_Os08g21920OsAffx.20020.1.S1_x_at1/118+13087574..13096254retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5895.1.S1_at--821--2771Chr08:13067132..13067156 (25 bp)
AAGAGCTTTCCATCGACTCAAAACA
LOC_Os08g21880
OsAffx.5895.1.S1_at--715--10671Chr08:13067125..13067149 (25 bp)
TTCCATCGACTCAAAACAGAGCTTG
LOC_Os08g21880
OsAffx.5895.1.S1_at--528--2491Chr08:13066816..13067135 (25 bp)
AACAGAGCTTGTAATCTATCCTGGA
LOC_Os08g21880
OsAffx.5895.1.S1_at--150--5931Chr08:13066812..13066990 (25 bp)
GAGCTTGTAATCTATCCTGGAATAA
LOC_Os08g21880
OsAffx.5895.1.S1_at--574--3692Chr12:1135623..1135643 (21 bp)
CTATCCTGGAATAACAAATTTGCAA
NONE
OsAffx.5895.1.S1_at--63--351Chr08:13066791..13066815 (25 bp)
ATAACAAATTTGCAATTTTCGCAGG
LOC_Os08g21880
OsAffx.5895.1.S1_at--800--4351Chr08:13066716..13066740 (25 bp)
CCAGCAGCAGTTGTAGCTCTAACAT
LOC_Os08g21880
OsAffx.5895.1.S1_at--384--6971Chr08:13066519..13066728 (25 bp)
GTAGCTCTAACATTATTCTTCTTCC
LOC_Os08g21880
OsAffx.5895.1.S1_at--559--2333Chr03:8585215..8585237 (23 bp)
AAAGATGTGATACTGAAGAGGCAAC
NONE
OsAffx.5895.1.S1_at--1115--6193Chr03:8585230..8585254 (25 bp)
GAGGCAACCATCTTAAACATCAAAG
NONE
OsAffx.5895.1.S1_at--478--9813Chr03:8585262..8585286 (25 bp)
TAAAATATTATCTGGAACTTATGCT
NONE
Target Sequence 
AAGAGCTTTCCATCGACTCAAAACAGAGCTTGTAATCTATCCTGGAATAACAAATTTGCAATTTTCGCAGGTCTACAGTG
ACTTGACTGTCGATTACTTCAAGATGTTCATGCTAAATGTTCCAGCAGCAGTTGTAGCTCTAACATTATTCTTCTTCCTG
GATGATTTGACAGGTTTTGAGATCACATATCTTCTTGAGAAAAGATGTGATACTGAAGAGGCAACCATCTTAAACATCAA
AGGGGATAATAAAATATTATCTGGAACTTATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis