Browse Element(s) Details


OsAffx.5922.1.S1_at

Description tigr:9636.m02487
TID=OsAffx.5922.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2536011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25330OsAffx.22947.1.S1_x_at11/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.2.S1_x_at4/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.3.S1_x_at4/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.5.S1_x_at1/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25340OsAffx.17145.1.S1_at10/118+15282192..15285240hypothetical protein
LOC_Os08g25350NANA8+15286027..15289348Transposable element protein, putative, MuDR
LOC_Os08g25360OsAffx.5922.1.S1_at11/118+15291319..15291645hypothetical protein
LOC_Os08g25370NANA8+15294777..15295628hypothetical protein
LOC_Os08g25380OsAffx.5923.1.S1_at11/118+15298796..15302440Serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed
LOC_Os08g25390Os.18966.1.S1_a_at11/118+15306511..15317764Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g25390Os.18966.2.S1_at11/118+15306511..15317764Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5922.1.S1_at--1157--4751Chr08:15291530..15291554 (25 bp)
GCTGCTTGGAGACCACGACGAAGAA
LOC_Os08g25360
OsAffx.5922.1.S1_at--681--2432Chr11:6518046..6518068 (23 bp)
AAAAGACTCAAATCCCATCGCTGGT
NONE
OsAffx.5922.1.S1_at--676--531Chr08:15291490..15291514 (25 bp)
ATCGCTGGTGATGCCTCCCTATTGC
LOC_Os08g25360
OsAffx.5922.1.S1_at--854--10191Chr08:15291471..15291495 (25 bp)
TATTGCTCCCCGACTGGGTCGAGCC
LOC_Os08g25360
OsAffx.5922.1.S1_at--1103--4092Chr11:6518000..6518020 (21 bp)
CGACTGGGTCGAGCCGTGCGCATCT
NONE
OsAffx.5922.1.S1_at--822--4491Chr08:15291449..15291473 (25 bp)
GCCGTGCGCATCTGCCGTGGGAATT
LOC_Os08g25360
OsAffx.5922.1.S1_at--75--471Chr08:15291440..15291464 (25 bp)
ATCTGCCGTGGGAATTCGGAGCGCC
LOC_Os08g25360
OsAffx.5922.1.S1_at--916--3151Chr08:15291428..15291452 (25 bp)
AATTCGGAGCGCCAGACAGCACTGC
LOC_Os08g25360
OsAffx.5922.1.S1_at--6--1992Chr11:6517947..6517971 (25 bp)
ACTGCGCAGGCCGTTGTGCCAAATG
NONE
OsAffx.5922.1.S1_at--29--4512Chr11:6517938..6517962 (25 bp)
GCCGTTGTGCCAAATGACCTTGTCA
NONE
OsAffx.5922.1.S1_at--211--4392Chr11:6517930..6517954 (25 bp)
GCCAAATGACCTTGTCAGATGCAGT
NONE
Target Sequence 
GCTGCTTGGAGACCACGACGAAGAAAAAGACTCAAATCCCATCGCTGGTGATGCCTCCCTATTGCTCCCCGACTGGGTCG
AGCCGTGCGCATCTGCCGTGGGAATTCGGAGCGCCAGACAGCACTGCGCAGGCCGTTGTGCCAAATGACCTTGTCAGATG
CAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis