Browse Element(s) Details


OsAffx.5924.1.S1_at

Description tigr:9636.m02497
TID=OsAffx.5924.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2545011/11hypothetical protein
LOC_Os01g141601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25420OsAffx.17147.1.S1_at11/118+15341092..15341714expressed protein
LOC_Os08g25430Os.17809.1.S1_at11/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25430Os.57449.1.S1_x_at1/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25440OsAffx.17148.1.S1_at11/118+15351518..15353290hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_x_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25460Os.11904.1.S1_at11/118+15361445..15368999transcription initiation factor IIE, alpha subunit, putative, expressed
LOC_Os08g25470OsAffx.17149.1.S1_at11/118+15369335..15370678hypothetical protein
LOC_Os08g25480OsAffx.29346.1.S1_at11/118+15373015..15373850hypothetical protein
LOC_Os08g25490OsAffx.17150.1.S1_at11/118+15377583..15379272Reticuline oxidase precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5924.1.S1_at--906--2531Chr08:15358610..15358634 (25 bp)
AACTCCGGTGACAAGCGACGGCGGT
LOC_Os08g25450
OsAffx.5924.1.S1_at--653--9031Chr08:15358586..15358610 (25 bp)
TGCACGGGAAGCGAACGTTCAGCGA
LOC_Os08g25450
OsAffx.5924.1.S1_at--872--5451Chr08:15358574..15358598 (25 bp)
GAACGTTCAGCGAGTTTCCATCGAC
LOC_Os08g25450
OsAffx.5924.1.S1_at--340--2591Chr08:15358573..15358597 (25 bp)
AACGTTCAGCGAGTTTCCATCGACG
LOC_Os08g25450
OsAffx.5924.1.S1_at--525--1891Chr08:15358572..15358596 (25 bp)
ACGTTCAGCGAGTTTCCATCGACGG
LOC_Os08g25450
OsAffx.5924.1.S1_at--102--4031Chr08:15358571..15358595 (25 bp)
CGTTCAGCGAGTTTCCATCGACGGG
LOC_Os08g25450
OsAffx.5924.1.S1_at--445--10511Chr08:15358569..15358593 (25 bp)
TTCAGCGAGTTTCCATCGACGGGGA
LOC_Os08g25450
OsAffx.5924.1.S1_at--689--5791Chr08:15358529..15358553 (25 bp)
TGCCCTTGCGGTGGTTAGGGTGGCG
LOC_Os08g25450
OsAffx.5924.1.S1_at--552--8012Chr01:7933466..7933663 (25 bp)
GGAGGCGGCAGTGGCTCAGATGCAT
LOC_Os01g14160
OsAffx.5924.1.S1_at--217--9131Chr08:15358394..15358418 (25 bp)
TGCGGAGAAGCCGTCAATGGAAACG
LOC_Os08g25450
OsAffx.5924.1.S1_at--64--8431Chr08:15358170..15358194 (25 bp)
GGCCGGAGCTCATCGGAAAGCGGCG
LOC_Os08g25450
Target Sequence 
AACTCCGGTGACAAGCGACGGCGGTGCACGGGAAGCGAACGTTCAGCGAGTTTCCATCGACGGGGAGGTGGTGGCCGAGC
TTGCCCTTGCGGTGGTTAGGGTGGCGGTGGTGGCCGGTTTTACGCGACGGGAGGCGGCAGTGGCTCAGATGCATGGTGGA
ATGGTGTTTTGGTGGTGGTTTTGTGGGTTTGGAGTGGAGGCCGGGGTGGAGCTTGATGCGGAGAAGCCGTCAATGGAAAC
GGCGCAGCACAACGGCGGTGGGAGCGTTGGTGGCGCGCGGCTGGAGTCGGTGGCGGCGGCGGAGAGAGGTGGTGCGCGAA
GCGGCGGTGTTCCGGAGGCGGAGAGGGGAAATGGAGTAGGGGCCGGGCTGCGGCACGGCGCCGCGAAGCCGACGGTGGTG
GCGGATTGGCGCGGCGGTGGGTGGAGCAGCGGTGGCGGGTGGCCGGAGCTCATCGGAAAGCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis