Browse Element(s) Details


OsAffx.5965.1.S1_at

Description tigr:9636.m02822
TID=OsAffx.5965.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2851011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28470OsAffx.17210.1.S1_at11/118+17246944..17250959disease resistance protein RPM1 homolog, putative
LOC_Os08g28470OsAffx.7163.1.S1_at1/118+17246944..17250959disease resistance protein RPM1 homolog, putative
LOC_Os08g28480OsAffx.17211.1.S1_at10/118+17251653..17254587hypothetical protein
LOC_Os08g28490Os.40360.1.S1_x_at3/118+17256920..17259523hypothetical protein
LOC_Os08g28490Os.40855.5.S1_x_at1/118+17256920..17259523hypothetical protein
LOC_Os08g28500Os.46012.2.S1_x_at6/118+17264300..17269960retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28500Os.46012.3.S1_x_at4/118+17264300..17269960retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28500Os.27088.1.A1_x_at3/118+17264300..17269960retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28510OsAffx.5965.1.S1_at11/118+17272381..17277484hypothetical protein
LOC_Os08g28520Os.46012.3.S1_at4/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28520Os.46012.2.S1_x_at3/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28520Os.46012.3.S1_x_at3/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28520Os.27088.1.A1_x_at3/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28530NANA8+17289335..17293458retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28540OsAffx.29401.1.S1_at11/118+17294555..17298598NB-ARC domain containing protein
LOC_Os08g28550OsAffx.29402.1.S1_at11/118+17301449..17302093hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5965.1.S1_at--428--6331Chr08:17274920..17274944 (25 bp)
GATGCAGCTTGGGAGAACACTTTCA
LOC_Os08g28510
OsAffx.5965.1.S1_at--326--32Chr10:46978..47002 (25 bp)
ATTGGTATTTTCTTCCACATGCCGA
NONE
OsAffx.5965.1.S1_at--1109--591Chr08:17274872..17274896 (25 bp)
ATGCCGATGACACACAATGCTCTTT
LOC_Os08g28510
OsAffx.5965.1.S1_at--104--5471Chr08:17274707..17274731 (25 bp)
GAACTGGTGGCACTGCAACTAGCTA
LOC_Os08g28510
OsAffx.5965.1.S1_at--1116--3131Chr08:17274670..17274694 (25 bp)
AATTCTTCAACTTTGCAGGCACTAG
LOC_Os08g28510
OsAffx.5965.1.S1_at--252--8991Chr08:17274588..17274612 (25 bp)
TGAACCAGGCCATTGGAGCCTCAGA
LOC_Os08g28510
OsAffx.5965.1.S1_at--338--5872Chr10:47201..47224 (24 bp)
GAGCCTCAGACCTTTATGGAGCCAA
NONE
OsAffx.5965.1.S1_at--1047--4591Chr08:17272470..17272710 (25 bp)
GCGAGACTACGGAACTTGGCCAGAT
LOC_Os08g28510
OsAffx.5965.1.S1_at--261--8451Chr08:17272453..17272477 (25 bp)
GGCCAGATTGGAGTCGACTTGTATT
LOC_Os08g28510
OsAffx.5965.1.S1_at--12--2071Chr08:17272437..17272461 (25 bp)
ACTTGTATTGTCTTGTTGGCTTTTG
LOC_Os08g28510
OsAffx.5965.1.S1_at--1098--8311Chr08:17272411..17272435 (25 bp)
GGCTCATGTTGGTTTTGTGATCGCC
LOC_Os08g28510
Target Sequence 
GATGCAGCTTGGGAGAACACTTTCATAGGGATTGGTATTTTCTTCCACATGCCGATGACACACAATGCTCTTTTTATTAA
GAGATTTGCTCTGGCAGAACTGGTGGCACTGCAACTAGCTATGGAGATTGCCAAATTCTTCAACTTTGCAGGCACTAGTT
TTTTAACTGATAATTCAGTAATAGCGGACACGATCAAGAAAAGAGACTTCAACAATGAACCAGGCCATTGGAGCCTCAGA
CCTTTATGGAGCCAAATTCAAAGAGACATAGCTGAAAATTTGTTCCAGGTGGCATGGATTCCATGGAAAATCAACAAGGT
GGCTGACAAGGTAAAAGTAAAGGTATATCTTAAGTATGAAGAGGCATATACCTCTTCAAGAATGGGAGAAAATCTCTTTA
TGTATTTAATTTGTACTGATACTAAGGTATATGCGAGACTACGGAACTTGGCCAGATTGGAGTCGACTTGTATTGTCTTG
TTGGCTTTTGTGGCTCATGTTGGTTTTGTGATCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis