Browse Element(s) Details


OsAffx.6022.1.S1_at

Description tigr:9636.m03474
TID=OsAffx.6022.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3462011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34590Os.45976.1.S1_at5/118+21601775..21604993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34590Os.45976.1.S1_x_at3/118+21601775..21604993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34600Os.46306.1.S1_x_at6/118+21607586..21610911transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34610OsAffx.29509.1.S1_at8/118+21615253..21617175hypothetical protein
LOC_Os08g34620OsAffx.6022.1.S1_at11/118+21622638..21623560hypothetical protein
LOC_Os08g34640Os.50267.1.S1_at11/118+21623684..21629276Leucine Rich Repeat family protein, expressed
LOC_Os08g34630OsAffx.29510.1.S1_at11/118+21629199..21630666hypothetical protein
LOC_Os08g34650Os.54177.1.S1_s_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34650OsAffx.29511.1.S1_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34650Os.18569.1.S1_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34660OsAffx.17332.1.S1_at11/118+21639890..21640731hypothetical protein
LOC_Os08g34670NANA8+21645020..21647880retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6022.1.S1_at--211--5651Chr08:21622768..21622792 (25 bp)
GACAGCAAAGTGACGGCGGTCCAGC
LOC_Os08g34620
OsAffx.6022.1.S1_at--843--8351Chr08:21622782..21622806 (25 bp)
GGCGGTCCAGCCCAGGCAGAAAAAA
LOC_Os08g34620
OsAffx.6022.1.S1_at--1132--8591Chr08:21622809..21622833 (25 bp)
TGGTCCCCGAATCGACAGCATGCTA
LOC_Os08g34620
OsAffx.6022.1.S1_at--490--1511Chr08:21622838..21622862 (25 bp)
AGCAGCTGCGGTGTGGAATCCCCAA
LOC_Os08g34620
OsAffx.6022.1.S1_at--959--8051Chr08:21622872..21623345 (25 bp)
GGAGAGCATTTAGGATTCCACATAT
LOC_Os08g34620
OsAffx.6022.1.S1_at--525--6771Chr08:21623371..21623395 (25 bp)
GTTAGATTCAAATTCGGTCCACTTT
LOC_Os08g34620
OsAffx.6022.1.S1_at--315--3731Chr08:21623385..21623409 (25 bp)
CGGTCCACTTTTCAGGGAGTCAAAT
LOC_Os08g34620
OsAffx.6022.1.S1_at--866--3251Chr08:21623428..21623452 (25 bp)
CAACGTCCAGCCCATATACGATGAT
LOC_Os08g34620
OsAffx.6022.1.S1_at--76--6391Chr08:21623450..21623474 (25 bp)
GATCTGGAACTGGACTACGGCCTAC
LOC_Os08g34620
OsAffx.6022.1.S1_at--404--9931Chr08:21623465..21623489 (25 bp)
TACGGCCTACTTTTGGCCCATGATA
LOC_Os08g34620
OsAffx.6022.1.S1_at--60--3111Chr08:21623506..21623530 (25 bp)
AATATGCACATACAGAAACTCGGGT
LOC_Os08g34620
Target Sequence 
GACAGCAAAGTGACGGCGGTCCAGCCCAGGCAGAAAAAAACTGGTCCCCGAATCGACAGCATGCTAGGGGAGCAGCTGCG
GTGTGGAATCCCCAAATCCACGAAGGAGAGCATTTAGGATTCCACATATCTGGTATTATGGTTGAGAGTTACGAGTTAGA
TTCAAATTCGGTCCACTTTTCAGGGAGTCAAATTGAACTTATTCCTATGGCCAACGTCCAGCCCATATACGATGATCTGG
AACTGGACTACGGCCTACTTTTGGCCCATGATATATGGGCTGGAACAGGAATATGCACATACAGAAACTCGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis