Browse Element(s) Details


OsAffx.6045.1.S1_s_at

Description tigr:9636.m03678
TID=OsAffx.6045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3661011/11hypothetical protein
LOC_Os03g6018011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36540Os.55778.1.S1_at11/118+22936461..22937758Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g36550OsAffx.6043.1.S1_at9/118+22939321..22941710hypothetical protein
LOC_Os08g36560OsAffx.6044.1.S1_at11/118+22943250..22944601emp24/gp25L/p24 family protein
LOC_Os08g36570Os.56199.1.S1_at9/118+22945023..22946523expressed protein
LOC_Os08g36580Os.51364.1.A1_at11/118+22947474..22948192expressed protein
LOC_Os08g36580OsAffx.24604.1.S1_at1/118+22947474..22948192expressed protein
LOC_Os08g36590Os.54549.1.S1_at11/118+22952678..22954761expressed protein
LOC_Os08g36600OsAffx.29562.1.S1_at11/118+22959336..22959707hypothetical protein
LOC_Os08g36610OsAffx.6045.1.S1_s_at11/118+22961207..22961824hypothetical protein
LOC_Os08g36610OsAffx.6045.1.S1_at11/118+22961207..22961824hypothetical protein
LOC_Os08g36610OsAffx.13557.1.S1_x_at1/118+22961207..22961824hypothetical protein
LOC_Os08g36620OsAffx.22848.3.S1_x_at3/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36620OsAffx.22848.4.S1_at2/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36620OsAffx.22848.4.S1_x_at1/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36630Os.18654.1.S1_x_at11/118+22984187..22986647Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g36630Os.18654.2.S1_at10/118+22984187..22986647Eukaryotic-type carbonic anhydrase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6045.1.S1_s_at--370--5392Chr08:22961237..22961261 (25 bp)
GAAGCATCATCCAAAGGGAAGAAGT
LOC_Os08g36610
OsAffx.6045.1.S1_s_at--192--6472Chr08:22961264..22961288 (25 bp)
GATACACCTACCAGAGTCAGTCGCC
LOC_Os08g36610
OsAffx.6045.1.S1_s_at--528--9852Chr08:22961266..22961290 (25 bp)
TACACCTACCAGAGTCAGTCGCCAA
LOC_Os08g36610
OsAffx.6045.1.S1_s_at--544--1652Chr08:22961269..22961293 (25 bp)
ACCTACCAGAGTCAGTCGCCAAAAA
LOC_Os08g36610
OsAffx.6045.1.S1_s_at--1011--3712Chr08:22961271..22961295 (25 bp)
CTACCAGAGTCAGTCGCCAAAAAGA
LOC_Os08g36610
OsAffx.6045.1.S1_s_at--973--1712Chr08:22961273..22961297 (25 bp)
ACCAGAGTCAGTCGCCAAAAAGAGG
LOC_Os08g36610
OsAffx.6045.1.S1_s_at--546--7112Chr08:22961279..22961303 (25 bp)
GTCAGTCGCCAAAAAGAGGCTGCTA
LOC_Os08g36610
OsAffx.6045.1.S1_s_at--415--1152Chr08:22961282..22961306 (25 bp)
AGTCGCCAAAAAGAGGCTGCTACAG
LOC_Os08g36610
OsAffx.6045.1.S1_s_at--892--2792Chr08:22961292..22961316 (25 bp)
AAGAGGCTGCTACAGATGCCAACTT
LOC_Os08g36610
OsAffx.6045.1.S1_s_at--362--6212Chr08:22961294..22961318 (25 bp)
GAGGCTGCTACAGATGCCAACTTGG
LOC_Os08g36610
OsAffx.6045.1.S1_s_at--595--8332Chr08:22961296..22961320 (25 bp)
GGCTGCTACAGATGCCAACTTGGAT
LOC_Os08g36610
Target Sequence 
GAAGCATCATCCAAAGGGAAGAAGTTCGATACACCTACCAGAGTCAGTCGCCAAAAAGAGGCTGCTACAGATGCCAACTT
GGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6045.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis