Browse Element(s) Details


OsAffx.6084.1.S1_at

Description tigr:9636.m03980
TID=OsAffx.6084.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3940011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39380Os.21874.1.S1_at11/118+24754930..24759033beta-2-xylosyltransferase, putative, expressed
LOC_Os08g39390OsAffx.17417.2.S1_x_at11/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.17417.2.S1_at11/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.17417.1.S1_x_at3/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.29835.1.S1_x_at1/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39400OsAffx.6084.1.S1_at11/118+24781793..24782206hypothetical protein
LOC_Os08g39410OsAffx.32166.1548.S1_s_at11/118+24784525..24790499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39420Os.26047.1.S1_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.2.S1_s_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.1.S1_x_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.2.S1_at4/118+24796731..24801938expressed protein
LOC_Os08g39430Os.47358.1.A1_at11/118+24802771..24803773expressed protein
LOC_Os08g39440Os.7534.2.S1_a_at11/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39440Os.2240.2.A1_at1/118+24805873..24814078RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6084.1.S1_at--571--6091Chr08:24782120..24782144 (25 bp)
GAGTCACGTTGCTGGGTTGTCTGAT
LOC_Os08g39400
OsAffx.6084.1.S1_at--731--7671Chr08:24782107..24782131 (25 bp)
GGGTTGTCTGATACTCACACACATG
LOC_Os08g39400
OsAffx.6084.1.S1_at--1156--3711Chr08:24782054..24782078 (25 bp)
CTACTGGTACACACAGGCCATGGAT
LOC_Os08g39400
OsAffx.6084.1.S1_at--148--7931Chr08:24782012..24782036 (25 bp)
GGATTGTTCCTTTGATATGACCCTT
LOC_Os08g39400
OsAffx.6084.1.S1_at--325--6511Chr08:24781999..24782023 (25 bp)
GATATGACCCTTCAAACAGCCAAAA
LOC_Os08g39400
OsAffx.6084.1.S1_at--922--5611Chr08:24781951..24781975 (25 bp)
GACAACCTAGGAGTTCCACACGGAA
LOC_Os08g39400
OsAffx.6084.1.S1_at--491--10011Chr08:24781914..24781938 (25 bp)
TAGAGCGTGGCATGGTTTCAACGAA
LOC_Os08g39400
OsAffx.6084.1.S1_at--302--3091Chr08:24781885..24781909 (25 bp)
AATTTCGGACCGTTTGATTGGCTTG
LOC_Os08g39400
OsAffx.6084.1.S1_at--717--2811Chr08:24781860..24781884 (25 bp)
AAGATTTGTGCGTCAGGCTCCTCGA
LOC_Os08g39400
OsAffx.6084.1.S1_at--43--6371Chr08:24781837..24781861 (25 bp)
GATCCAGCTCTAGCGACTCGTATAG
LOC_Os08g39400
OsAffx.6084.1.S1_at--29--5711Chr08:24781823..24781847 (25 bp)
GACTCGTATAGTGGCAACCCTTCTA
LOC_Os08g39400
Target Sequence 
GAGTCACGTTGCTGGGTTGTCTGATACTCACACACATGGCCACCTAGCTATCCAGCTGCTTCACGCCTACTGGTACACAC
AGGCCATGGATCGATTGACTGAATGGATGGATTGTTCCTTTGATATGACCCTTCAAACAGCCAAAATTTGCAGTACTGGA
GTTATGACTGACAACCTAGGAGTTCCACACGGAAAGCAGTCGAGAGTAGAGCGTGGCATGGTTTCAACGAAGGAGAATTT
CGGACCGTTTGATTGGCTTGAAGATTTGTGCGTCAGGCTCCTCGATCCAGCTCTAGCGACTCGTATAGTGGCAACCCTTC
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis