Browse Element(s) Details


OsAffx.6090.1.S1_at

Description tigr:9636.m04049
TID=OsAffx.6090.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4003011/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39980Os.57192.1.S1_x_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.54007.1.S1_s_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39990Os.49184.1.S1_at11/118+25200143..25201590expressed protein
LOC_Os08g40000OsAffx.29603.1.S1_at11/118+25204174..25204626hypothetical protein
LOC_Os08g40010Os.52786.1.S1_at10/118+25208257..25211106expressed protein
LOC_Os08g40020Os.55143.1.S1_at11/118+25211862..25213493selenium binding protein, putative, expressed
LOC_Os08g40030OsAffx.6090.1.S1_at11/118+25219037..25220910No apical meristem protein
LOC_Os08g40030Os.51926.1.S1_x_at1/118+25219037..25220910No apical meristem protein
LOC_Os08g40040OsAffx.6091.1.S1_at11/118+25221954..25227290hypothetical protein
LOC_Os08g40050Os.49866.1.S1_at11/118+25227626..25230734retrotransposon protein, putative, unclassified
LOC_Os08g40060Os.49470.1.S1_at11/118+25233344..25234383expressed protein
LOC_Os08g40070NANA8+25237521..25238194hypothetical protein
LOC_Os08g40080NANA8+25241787..25242433expressed protein
LOC_Os08g40090Os.14329.1.S1_at11/118+25244851..25247749leucine-rich repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0010014biological_processmeristem initiation
GO:0010072biological_processprimary shoot apical meristem specification
GO:0010199biological_processorgan boundary specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6090.1.S1_at--921--1451Chr08:25220456..25220480 (25 bp)
AGAAGACCAAGTGGGTCCTCCACGA
LOC_Os08g40030
OsAffx.6090.1.S1_at--136--951Chr08:25219533..25219557 (25 bp)
AGGAATGGGTGATCTGCAGGATCTT
LOC_Os08g40030
OsAffx.6090.1.S1_at--383--3851Chr08:25219520..25219544 (25 bp)
CTGCAGGATCTTTCACAAGGTAGGA
LOC_Os08g40030
OsAffx.6090.1.S1_at--1114--8851Chr08:25219473..25219497 (25 bp)
TGATGAAGAGCCCAGCCAGCTACTA
LOC_Os08g40030
OsAffx.6090.1.S1_at--101--9051Chr08:25219326..25219350 (25 bp)
TGCAGCACAGCCATGCGAACAGCAA
LOC_Os08g40030
OsAffx.6090.1.S1_at--358--2151Chr08:25219245..25219269 (25 bp)
ACAGCAGCGATAACCACATTTCTTG
LOC_Os08g40030
OsAffx.6090.1.S1_at--428--9251Chr08:25219180..25219204 (25 bp)
TCCTTCAGCTGTGCTAGTACTGTCA
LOC_Os08g40030
OsAffx.6090.1.S1_at--1117--7311Chr08:25219170..25219194 (25 bp)
GTGCTAGTACTGTCACTGGCAAGGG
LOC_Os08g40030
OsAffx.6090.1.S1_at--133--1171Chr08:25219124..25219148 (25 bp)
AGTCAACGCCGGTCAACAGGAGCCA
LOC_Os08g40030
OsAffx.6090.1.S1_at--1110--6231Chr08:25219085..25219109 (25 bp)
GATGGACGCTTACCTGCAGCACAGT
LOC_Os08g40030
OsAffx.6090.1.S1_at--432--5051Chr08:25219070..25219094 (25 bp)
GCAGCACAGTGGATTCATTTATGAG
LOC_Os08g40030
Target Sequence 
AGAAGACCAAGTGGGTCCTCCACGAGTACCGCCTCGACGGCGACTTCGCCGCCGCTCGCCGCTCCACCAAGGAGGAATGG
GTGATCTGCAGGATCTTTCACAAGGTAGGAGATCAGTACAGCAAGCTGATGATGATGAAGAGCCCAGCCAGCTACTACCT
CCCAGTGAGCCACCACCACCCCAGCAGCATCTTCCATGACCTTCCTCCGGTCCCATTCCCAAACCCTAGCCTCGTCCCCT
TCCACCATGATCTCCCCACAAGCTTCCATCCTCCATTGCTGCAGCACAGCCATGCGAACAGCAAGAACAGCAGCAGCAAC
AATGGCGGCTTCGTCTTCCCCAATGAGCCAAACACCACAAACAGCAGCGATAACCACATTTCTTGCAATGGCGCCATGGC
TGCTGCTGCTGCTGCTGCTTTTCCTTCCTTCAGCTGTGCTAGTACTGTCACTGGCAAGGGGGGCCCACCGGCGCAGCTCG
GAGTCAACGCCGGTCAACAGGAGCCACCGCCACCTACCTGGATGGACGCTTACCTGCAGCACAGTGGATTCATTTATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis