Browse Element(s) Details


OsAffx.6095.1.S1_at

Description tigr:9636.m04101
TID=OsAffx.6095.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to C2H2 zinc-finger protein SERRATE
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g405409/11C2H2 zinc-finger protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40510Os.11481.1.S1_s_at11/118+25510771..25512440expressed protein
LOC_Os08g40520Os.43185.1.S1_at11/118+25516041..25518798expressed protein
LOC_Os08g40530Os.10351.2.S1_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40530Os.10351.1.S1_a_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40540OsAffx.6095.1.S1_s_at11/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540OsAffx.6095.1.S1_at9/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540Os.15831.4.S1_x_at1/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40550Os.45957.4.S1_x_at11/118+25535896..25540697retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40560Os.15831.4.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560OsAffx.6874.1.S1_at1/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40570Os.27275.1.S1_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40570Os.27275.2.S1_x_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40580Os.6650.1.S1_at11/118+25554795..25557771spermine/spermidine synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6095.1.S1_at--351--11Chr08:25535478..25535500 (23 bp)
ATAGGGTACCAAATAATTAATCGTG
LOC_Os08g40540
OsAffx.6095.1.S1_at--548--351Chr08:25535371..25535488 (25 bp)
ATAATTAATCGTGACAACCCTGATG
LOC_Os08g40540
OsAffx.6095.1.S1_at--894--2611Chr08:25535356..25535380 (25 bp)
AACCCTGATGATCCACTCTTTTGTT
LOC_Os08g40540
OsAffx.6095.1.S1_at--39--3871Chr08:25535352..25535376 (25 bp)
CTGATGATCCACTCTTTTGTTCTTT
LOC_Os08g40540
OsAffx.6095.1.S1_at--856--6291Chr08:25535350..25535374 (25 bp)
GATGATCCACTCTTTTGTTCTTTTG
LOC_Os08g40540
OsAffx.6095.1.S1_at--425--6731Chr08:25535334..25535358 (25 bp)
GTTCTTTTGGTTATCCAGTTACACA
LOC_Os08g40540
OsAffx.6095.1.S1_at--977--10831Chr08:25535328..25535352 (25 bp)
TTGGTTATCCAGTTACACATGGTGC
LOC_Os08g40540
OsAffx.6095.1.S1_at--170--1851NONE
ACGCAAGATACGAAGTGTCACACCC
NONE
OsAffx.6095.1.S1_at--1072--6471NONE
GATACGAAGTGTCACACCCGATGGT
NONE
OsAffx.6095.1.S1_at--839--4111Chr08:25534278..25534299 (22 bp)
CGAAGTGTCACACCCGATGGTATGA
LOC_Os08g40540
OsAffx.6095.1.S1_at--546--8731Chr08:25534273..25534297 (25 bp)
TGTCACACCCGATGGTATGACAGGG
LOC_Os08g40540
Target Sequence 
ATAGGGTACCAAATAATTAATCGTGACAACCCTGATGATCCACTCTTTTGTTCTTTTGGTTATCCAGTTACACATGGTGC
CTTTCCTCCAGATGTTTCTGTTCCAGCGCTGATGCTTGAGCCTTGTGCTGGGCAAAAACTAGGACTATTTGTTTCTGCGC
CTGAAGTTGCTATCCGTATGTTGAGGGATCAGGGCAGGCCATCACCTTTTGAGCCGAATTTCGGTCGTCCAGAACCACGC
AAGATACGAAGTGTCACACCCGATGGTATGACAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis