Browse Element(s) Details


OsAffx.6101.1.S1_at

Description tigr:9636.m04179
TID=OsAffx.6101.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4119011/11BTB/POZ domain containing protein
LOC_Os08g412001/11speckle-type POZ protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41140OsAffx.22940.2.S1_s_at11/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.1.S1_s_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_x_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.3.S1_x_at9/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.3.S1_x_at8/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.18.S1_x_at6/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.31552.2.S1_at1/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.2.S1_at1/118+25858437..25862921hypothetical protein
LOC_Os08g41150OsAffx.21997.5.S1_at11/118+25864777..25865856BTB/POZ domain containing protein
LOC_Os08g41150OsAffx.21997.3.S1_x_at1/118+25864777..25865856BTB/POZ domain containing protein
LOC_Os08g41160Os.47463.1.S1_x_at4/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g41160Os.14491.2.S1_x_at3/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g41170OsAffx.21997.4.S1_at11/118+25880693..25881717BTB/POZ domain containing protein
LOC_Os08g41180OsAffx.21997.3.S1_x_at1/118+25882504..25883469BTB/POZ domain containing protein
LOC_Os08g41190OsAffx.6101.1.S1_at11/118+25887421..25888506BTB/POZ domain containing protein
LOC_Os08g41200OsAffx.17450.1.S1_at11/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41200OsAffx.6101.1.S1_at1/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41210OsAffx.17451.1.S1_at11/118+25891924..25893397expressed protein
LOC_Os08g41220OsAffx.6102.1.S1_at10/118+25895326..25899804BTB/POZ domain containing protein
LOC_Os08g41230OsAffx.17452.1.S1_at11/118+25904090..25906978BTB/POZ domain containing protein
LOC_Os08g41240OsAffx.17453.1.S1_at11/118+25911424..25912473BTB/POZ domain containing protein
LOC_Os08g41240OsAffx.17453.1.S1_x_at11/118+25911424..25912473BTB/POZ domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6101.1.S1_at--847--991Chr08:25887944..25887968 (25 bp)
AGGATGGTGCGGATGTCACCTTCGT
LOC_Os08g41190
OsAffx.6101.1.S1_at--91--8071Chr08:25887844..25887868 (25 bp)
GGAGCTCTTTGGCTGCAAGTCCGAA
LOC_Os08g41190
OsAffx.6101.1.S1_at--576--9411Chr08:25887804..25887828 (25 bp)
TCGTCGTGCATTACGCTGCAGGGAA
LOC_Os08g41190
OsAffx.6101.1.S1_at--57--3851Chr08:25887789..25887813 (25 bp)
CTGCAGGGAATCGAGCCGGCGATAT
LOC_Os08g41190
OsAffx.6101.1.S1_at--773--9651Chr08:25887764..25887788 (25 bp)
TCAGAGCTCTGCTCCGATTCATCTA
LOC_Os08g41190
OsAffx.6101.1.S1_at--1129--3412Chr08:25887722..25887746 (25 bp)
CAGACGCCGGCAAACTCCATCAGGG
LOC_Os08g41190
OsAffx.6101.1.S1_at--173--7191Chr08:25887691..25887715 (25 bp)
GTCGACGAACGTGTTCTTCAAGCAC
LOC_Os08g41190
OsAffx.6101.1.S1_at--21--2131Chr08:25887635..25887659 (25 bp)
ACAGGCTAAAGATCATGTGCGGACA
LOC_Os08g41190
OsAffx.6101.1.S1_at--557--8511Chr08:25887602..25887626 (25 bp)
TGGACAACATGACGCCGGATTCGGT
LOC_Os08g41190
OsAffx.6101.1.S1_at--920--4031Chr08:25887572..25887596 (25 bp)
CGATCTTGGTTTGCGCCGAGATGTA
LOC_Os08g41190
OsAffx.6101.1.S1_at--109--4831Chr08:25887457..25887481 (25 bp)
GCTCATGCAGAAATTCCCGGTCATT
LOC_Os08g41190
Target Sequence 
AGGATGGTGCGGATGTCACCTTCGTCGTCGTCGGCGGCGGCGGCGAGAGGTTCGCCGCTCACCGTGCCGTGCTCGCCGCC
CGGTCGCCGGTGTTCAGGACGGAGCTCTTTGGCTGCAAGTCCGAATCCACCTCGCCGTCGTCGTCGTGCATTACGCTGCA
GGGAATCGAGCCGGCGATATTCAGAGCTCTGCTCCGATTCATCTACACGGACGAGTTGCCTGCAGACGCCGGCAAACTCC
ATCAGGGCTCCTCGTCGACGAACGTGTTCTTCAAGCACCTGCTCGCCATGGCCGACAGGTACGCGCTGGACAGGCTAAAG
ATCATGTGCGGACAGAGGTTGCTGGACAACATGACGCCGGATTCGGTCGCCGCGATCTTGGTTTGCGCCGAGATGTACAA
CTGCCCGGAGCTGAAGAACAAGTGCATCGATTTCTTTGCCGTCGAGGAGAATTTCAGGAAGGCCGTGTTCACCGATGGTT
TTGCACTGCTCATGCAGAAATTCCCGGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis