Browse Element(s) Details


OsAffx.6131.1.S1_at

Description tigr:9636.m04502
TID=OsAffx.6131.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4418011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44124OsAffx.30340.1.S1_x_at2/118+27649285..27653530retrotransposon protein, putative, unclassified
LOC_Os08g44140Os.10947.1.S1_at7/118+27657462..27661313Transmembrane 9 superfamily protein member 2 precursor, putative, expressed
LOC_Os08g44150OsAffx.29656.1.S1_at11/118+27661488..27664495Endomembrane protein 70 containing protein, expressed
LOC_Os08g44160OsAffx.29657.1.S1_at11/118+27664727..27669909hypothetical protein
LOC_Os08g44160Os.54371.1.S1_x_at1/118+27664727..27669909hypothetical protein
LOC_Os08g44170OsAffx.17512.1.S1_at11/118+27670191..27677162transposon protein, putative, unclassified
LOC_Os08g44180OsAffx.6131.1.S1_at11/118+27678174..27681514expressed protein
LOC_Os08g44180Os.15204.1.S1_at1/118+27678174..27681514expressed protein
LOC_Os08g44190OsAffx.6132.1.S1_s_at11/118+27685413..27686119Zinc finger, C2H2 type family protein, expressed
LOC_Os08g44200Os.5001.1.S1_at11/118+27692190..27697450YT521-B-like family protein, expressed
LOC_Os08g44210Os.11002.1.S1_at11/118+27700148..27701289Dihydroneopterin aldolase, putative, expressed
LOC_Os08g44220Os.54453.1.S1_at10/118+27701741..27705263expressed protein
LOC_Os08g44220Os.50429.1.S1_at1/118+27701741..27705263expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6131.1.S1_at--1126--10331Chr08:27679306..27679330 (25 bp)
TTTACTACATTTTCTCACCAGGCAG
LOC_Os08g44180
OsAffx.6131.1.S1_at--110--6951Chr08:27679330..27679805 (25 bp)
GTAGACTTCATTCTGGCTTCACTGA
LOC_Os08g44180
OsAffx.6131.1.S1_at--934--7991Chr08:27679884..27679908 (25 bp)
GGATGTGCACCACTCCTGAAAATGC
LOC_Os08g44180
OsAffx.6131.1.S1_at--263--10751Chr08:27680273..27680297 (25 bp)
TTGACTGTTCAGATGCCCAATTCTC
LOC_Os08g44180
OsAffx.6131.1.S1_at--467--9311Chr08:27680296..27680320 (25 bp)
TCCCTGCAGCACTTATTCCGTAAGT
LOC_Os08g44180
OsAffx.6131.1.S1_at--210--6171Chr08:27680346..27680370 (25 bp)
GAGGATAATCCTTGCAATTTCTCAA
LOC_Os08g44180
OsAffx.6131.1.S1_at--249--7871Chr08:27680422..27680446 (25 bp)
GGTTTCCCTGAAATGCATAGCAATA
LOC_Os08g44180
OsAffx.6131.1.S1_at--903--6051Chr08:27680888..27680912 (25 bp)
GAGTTCCTAATATCTGACAGCTTCA
LOC_Os08g44180
OsAffx.6131.1.S1_at--378--8311Chr08:27680919..27680943 (25 bp)
GGCTATGCCGTGATCATTTTGACAG
LOC_Os08g44180
OsAffx.6131.1.S1_at--209--7831Chr08:27681346..27681370 (25 bp)
GGTCAGATCTATTCTCAAGGCACGA
LOC_Os08g44180
OsAffx.6131.1.S1_at--361--2891Chr08:27681445..27681469 (25 bp)
AAGGGAGGTAGCTCCTGCTGCTCAT
LOC_Os08g44180
Target Sequence 
TTTACTACATTTTCTCACCAGGCAGTAGACTTCATTCTGGCTTCACTGAAGAACATTCTCTCGTCAGAAAGGGAAAAGGA
GATAATCGAGGAGATAATCAATGGTTTGGTTGCACGTTTGATGAAAAGGATGTGCACCACTCCTGAAAATGCTGGATCAG
TTGACTGTTCAGATGCCCAATTCTCCCTGCAGCACTTATTCCGTAAGTTAGGAAATGAGGAGTTTGTTGGTCAGAGGATA
ATCCTTGCAATTTCTCAAAAGATCTCAAATGTATCAGAAAAATTACTTCTGGCAGATCCATTTGATGATGGTTTCCCTGA
AATGCATAGCAATATGTTTATTATGATACAATTAATCGAGTTCCTAATATCTGACAGCTTCAACAATTGGCTATGCCGTG
ATCATTTTGACAGAAAACTTTTTGAAGAATGGGTCAGATCTATTCTCAAGGCACGAAAGGACTTGGAAGTCCTAGATGGG
AGAAACGGACTGTATGTGGTATACATTGAGCGAGTGATTGGAAGATTGGCAAGGGAGGTAGCTCCTGCTGCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis