Browse Element(s) Details


OsAffx.6132.1.S1_s_at

Description tigr:9636.m04503
TID=OsAffx.6132.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C2H2 type, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4419011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44140Os.10947.1.S1_at7/118+27657462..27661313Transmembrane 9 superfamily protein member 2 precursor, putative, expressed
LOC_Os08g44150OsAffx.29656.1.S1_at11/118+27661488..27664495Endomembrane protein 70 containing protein, expressed
LOC_Os08g44160OsAffx.29657.1.S1_at11/118+27664727..27669909hypothetical protein
LOC_Os08g44160Os.54371.1.S1_x_at1/118+27664727..27669909hypothetical protein
LOC_Os08g44170OsAffx.17512.1.S1_at11/118+27670191..27677162transposon protein, putative, unclassified
LOC_Os08g44180OsAffx.6131.1.S1_at11/118+27678174..27681514expressed protein
LOC_Os08g44180Os.15204.1.S1_at1/118+27678174..27681514expressed protein
LOC_Os08g44190OsAffx.6132.1.S1_s_at11/118+27685413..27686119Zinc finger, C2H2 type family protein, expressed
LOC_Os08g44200Os.5001.1.S1_at11/118+27692190..27697450YT521-B-like family protein, expressed
LOC_Os08g44210Os.11002.1.S1_at11/118+27700148..27701289Dihydroneopterin aldolase, putative, expressed
LOC_Os08g44220Os.54453.1.S1_at10/118+27701741..27705263expressed protein
LOC_Os08g44220Os.50429.1.S1_at1/118+27701741..27705263expressed protein
LOC_Os08g44230Os.53754.2.S1_x_at11/118+27709586..27714790DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6132.1.S1_s_at--492--6191Chr08:27685648..27685672 (25 bp)
GAGGACATCGACCTTTCTCTCAAGT
LOC_Os08g44190
OsAffx.6132.1.S1_s_at--934--5831Chr08:27685639..27685663 (25 bp)
GACCTTTCTCTCAAGTTGTAAGCTA
LOC_Os08g44190
OsAffx.6132.1.S1_s_at--879--9791Chr08:27685621..27685645 (25 bp)
TAAGCTATACTGCTAGCCGGTGTCG
LOC_Os08g44190
OsAffx.6132.1.S1_s_at--374--7451Chr08:27685602..27685626 (25 bp)
GTGTCGCGTCCACACGCTTGTCATG
LOC_Os08g44190
OsAffx.6132.1.S1_s_at--490--611Chr08:27685580..27685604 (25 bp)
ATGCGTGTGCATGGTTACTGCCACT
LOC_Os08g44190
OsAffx.6132.1.S1_s_at--1157--7871Chr08:27685568..27685592 (25 bp)
GGTTACTGCCACTACTACCACTAGT
LOC_Os08g44190
OsAffx.6132.1.S1_s_at--604--2031Chr08:27685549..27685573 (25 bp)
ACTAGTCCACACTATCACCAGCTTG
LOC_Os08g44190
OsAffx.6132.1.S1_s_at--286--391Chr08:27685536..27685560 (25 bp)
ATCACCAGCTTGCTAGTGCTTTAAT
LOC_Os08g44190
OsAffx.6132.1.S1_s_at--175--7311Chr08:27685521..27685545 (25 bp)
GTGCTTTAATGTTACTTGTGTCCGT
LOC_Os08g44190
OsAffx.6132.1.S1_s_at--1007--9731Chr08:27685515..27685539 (25 bp)
TAATGTTACTTGTGTCCGTTTGACA
LOC_Os08g44190
OsAffx.6132.1.S1_s_at--730--631Chr08:27685448..27685472 (25 bp)
ATGCATATCTTGTGTTTCAACTTCC
LOC_Os08g44190
Target Sequence 
GAGGACATCGACCTTTCTCTCAAGTTGTAAGCTATACTGCTAGCCGGTGTCGCGTCCACACGCTTGTCATGCGTGTGCAT
GGTTACTGCCACTACTACCACTAGTCCACACTATCACCAGCTTGCTAGTGCTTTAATGTTACTTGTGTCCGTTTGACACA
AAAAAGCTAGCCAAATCGACAGGCAATTTGTGTGTATGCAATGCATATCTTGTGTTTCAACTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6132.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis