Browse Element(s) Details


OsAffx.6161.1.S1_s_at

Description tigr:9637.m00164
TID=OsAffx.6161.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0321011/11expressed protein
LOC_Os05g0190011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03170NANA9+1519973..1521792hypothetical protein
LOC_Os09g03180Os.41695.5.S1_x_at4/119+1523380..1528700transposon protein, putative, Mutator sub-class
LOC_Os09g03180Os.41695.3.S1_x_at1/119+1523380..1528700transposon protein, putative, Mutator sub-class
LOC_Os09g03180Os.46610.1.A1_x_at1/119+1523380..1528700transposon protein, putative, Mutator sub-class
LOC_Os09g03180OsAffx.21269.1.S1_x_at1/119+1523380..1528700transposon protein, putative, Mutator sub-class
LOC_Os09g03190Os.52750.1.S1_x_at9/119+1534607..1537149expressed protein
LOC_Os09g03190Os.54651.1.S1_at9/119+1534607..1537149expressed protein
LOC_Os09g03190OsAffx.30326.1.S1_x_at2/119+1534607..1537149expressed protein
LOC_Os09g03200OsAffx.19310.1.S1_at3/119+1538971..1539198hypothetical protein
LOC_Os09g03210OsAffx.6161.1.S1_s_at11/119+1545465..1548527expressed protein
LOC_Os09g03210OsAffx.6161.1.S1_x_at10/119+1545465..1548527expressed protein
LOC_Os09g03210OsAffx.26683.1.S1_x_at3/119+1545465..1548527expressed protein
LOC_Os09g03220NANA9+1553844..1555485hypothetical protein
LOC_Os09g03230NANA9+1557404..1559533hypothetical protein
LOC_Os09g03240OsAffx.21269.1.S1_x_at1/119+1561306..1561719retrotransposon protein, putative, unclassified
LOC_Os09g03250NANA9+1561898..1562991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03260NANA9+1566577..1569140retrotransposon protein, putative, unclassified
LOC_Os09g03270OsAffx.17551.1.S1_at11/119+1569879..1572892hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6161.1.S1_s_at--762--6312Chr09:1548141..1548165 (25 bp)
GATGACAGAGTTATGCAACTGCTGC
LOC_Os09g03210
OsAffx.6161.1.S1_s_at--1084--8952Chr09:1548143..1548167 (25 bp)
TGACAGAGTTATGCAACTGCTGCGA
LOC_Os09g03210
OsAffx.6161.1.S1_s_at--867--1212Chr09:1548149..1548173 (25 bp)
AGTTATGCAACTGCTGCGACGTGTT
LOC_Os09g03210
OsAffx.6161.1.S1_s_at--500--6752Chr09:1548150..1548174 (25 bp)
GTTATGCAACTGCTGCGACGTGTTG
LOC_Os09g03210
OsAffx.6161.1.S1_s_at--673--10432Chr09:1548151..1548175 (25 bp)
TTATGCAACTGCTGCGACGTGTTGT
LOC_Os09g03210
OsAffx.6161.1.S1_s_at--624--10132Chr09:1548152..1548176 (25 bp)
TATGCAACTGCTGCGACGTGTTGTA
LOC_Os09g03210
OsAffx.6161.1.S1_s_at--464--652Chr09:1548153..1548177 (25 bp)
ATGCAACTGCTGCGACGTGTTGTAG
LOC_Os09g03210
OsAffx.6161.1.S1_s_at--56--10112Chr09:1548244..1548268 (25 bp)
TATCCAGTCGCACTTTGAGGTTCAC
LOC_Os09g03210
OsAffx.6161.1.S1_s_at--1109--572Chr09:1548245..1548269 (25 bp)
ATCCAGTCGCACTTTGAGGTTCACT
LOC_Os09g03210
OsAffx.6161.1.S1_s_at--560--9232Chr09:1548246..1548270 (25 bp)
TCCAGTCGCACTTTGAGGTTCACTC
LOC_Os09g03210
OsAffx.6161.1.S1_s_at--586--3452Chr09:1548248..1548272 (25 bp)
CAGTCGCACTTTGAGGTTCACTCCA
LOC_Os09g03210
Target Sequence 
GATGACAGAGTTATGCAACTGCTGCGACGTGTTGTAGNAGTATCAGNAAATGAGATNTTGATACTGAATATTNANGCCCA
TAATATTCATCNGAATGATAANNTATCCAGTCGCACTTTGAGGTTCACTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6161.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis