Browse Element(s) Details


OsAffx.6164.1.S1_at

Description tigr:9637.m00204
TID=OsAffx.6164.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0380011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03750Os.52617.1.S1_at11/119+1891170..1900087Ankyrin-1, putative, expressed
LOC_Os09g03760OsAffx.29706.1.S1_at11/119+1904065..1904767hypothetical protein
LOC_Os09g03769NANA9+1911605..1912062NA
LOC_Os09g03780NANA9+1916710..1918670expressed protein
LOC_Os09g03790NANA9+1920818..1921186hypothetical protein
LOC_Os09g03800OsAffx.6164.1.S1_at11/119+1924653..1927064hypothetical protein
LOC_Os09g03800OsAffx.31780.1.S1_at1/119+1924653..1927064hypothetical protein
LOC_Os09g03810OsAffx.29709.1.S1_at11/119+1931253..1931886hypothetical protein
LOC_Os09g03820OsAffx.29322.1.S1_x_at3/119+1937703..1938074retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03830Os.27691.1.S1_x_at4/119+1938923..1943488retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03840Os.27691.2.S1_x_at1/119+1943739..1944482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03850OsAffx.6165.1.S1_at11/119+1948777..1951120hypothetical protein
LOC_Os09g03860Os.54634.1.S1_at1/119+1951557..1957218retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6164.1.S1_at--886--5951Chr09:1924749..1924773 (25 bp)
GAGAATTTCAAATCCTCTTCTAAGA
LOC_Os09g03800
OsAffx.6164.1.S1_at--109--1491Chr09:1924794..1924818 (25 bp)
AGCAAGATGCTTTCTAGCACCTATA
LOC_Os09g03800
OsAffx.6164.1.S1_at--834--2971Chr09:1925379..1925400 (22 bp)
AATGGTACCATGGTGCACGTTTCCA
LOC_Os09g03800
OsAffx.6164.1.S1_at--1019--9011Chr09:1925389..1925413 (25 bp)
TGCACGTTTCCAACTCATTACAGGG
LOC_Os09g03800
OsAffx.6164.1.S1_at--285--9871Chr09:1925407..1925431 (25 bp)
TACAGGGATTCAGTACCGTGCGGAA
LOC_Os09g03800
OsAffx.6164.1.S1_at--338--2991Chr09:1926696..1926720 (25 bp)
AATGTAGTGCGCCAACAACGAGTAA
LOC_Os09g03800
OsAffx.6164.1.S1_at--1132--2531Chr09:1926712..1926736 (25 bp)
AACGAGTAATTCTGGACCCTCTGGC
LOC_Os09g03800
OsAffx.6164.1.S1_at--456--4291Chr09:1926729..1926753 (25 bp)
CCTCTGGCCCTACAACTGATGTTGA
LOC_Os09g03800
OsAffx.6164.1.S1_at--810--5351Chr09:1926837..1926861 (25 bp)
GAAGATGCTCAACGACATGTGAACA
LOC_Os09g03800
OsAffx.6164.1.S1_at--489--5591Chr09:1926902..1926926 (25 bp)
GAAATTTGCCATTCCCGATTATCAT
LOC_Os09g03800
OsAffx.6164.1.S1_at--416--10031Chr09:1926958..1926982 (25 bp)
TAGATGGCCCTACCTCATTTAAAGA
LOC_Os09g03800
Target Sequence 
GAGAATTTCAAATCCTCTTCTAAGAATTATGCTAGTACAATCATTAGCAAGATGCTTTCTAGCACCTATAATGGTACCAT
GGTGCACGTTTCCAACTCATTACAGGGATTCAGTACCGTGCGGAAGAATGTAGTGCGCCAACAACGAGTAATTCTGGACC
CTCTGGCCCTACAACTGATGTTGAAGAAAGTGTTGATGAAAATAATGATGAAAGTAATGAGCATCAATAGAATTATGCGA
CATAGAATGAAGAAGAAATATCCAAAAGAAGATGCTCAACGACATGTGAACAACGATGAAAATCAGCAATTAAGAAGATC
ACAACAGGTAAGGAAATTTGCCATTCCCGATTATCATGAAGTTTATATGAGTGAAGATATAGGGAAGGTAGATGGCCCTA
CCTCATTTAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis