Browse Element(s) Details


OsAffx.6176.1.S1_at

Description tigr:9637.m00324
TID=OsAffx.6176.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0477011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04730Os.8274.1.S1_at10/119+2511446..2516209oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os09g04740OsAffx.22947.1.S1_x_at8/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.2.S1_x_at5/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.3.S1_x_at4/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.5.S1_x_at2/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04750NANA9+2532705..2533927retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04760OsAffx.17571.1.S1_at11/119+2534378..2534764hypothetical protein
LOC_Os09g04770OsAffx.6176.1.S1_at11/119+2538390..2539148hypothetical protein
LOC_Os09g04780NANA9+2543661..2543897hypothetical protein
LOC_Os09g04790Os.11810.2.S1_a_at10/119+2548092..2551800Light-induced protein, chloroplast precursor, putative, expressed
LOC_Os09g04800Os.18469.1.S1_at11/119+2556031..2560139BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os09g04810Os.26358.1.S1_x_at11/119+2560858..2564526expressed protein
LOC_Os09g04810Os.26358.2.S1_at10/119+2560858..2564526expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6176.1.S1_at--413--9711Chr09:2538926..2538950 (25 bp)
TCAACTACCGCAAGTGCCATTGCAA
LOC_Os09g04770
OsAffx.6176.1.S1_at--354--9971Chr09:2538921..2538945 (25 bp)
TACCGCAAGTGCCATTGCAACACCG
LOC_Os09g04770
OsAffx.6176.1.S1_at--1002--2851Chr09:2538915..2538939 (25 bp)
AAGTGCCATTGCAACACCGTCGCCA
LOC_Os09g04770
OsAffx.6176.1.S1_at--650--6651Chr09:2538851..2538875 (25 bp)
GTTGAGATGAAACCAGATGAGACAT
LOC_Os09g04770
OsAffx.6176.1.S1_at--1007--6291Chr09:2538569..2538593 (25 bp)
GATGATGACGACATGGCCACTGAGG
LOC_Os09g04770
OsAffx.6176.1.S1_at--1053--8931Chr09:2538564..2538588 (25 bp)
TGACGACATGGCCACTGAGGATTTA
LOC_Os09g04770
OsAffx.6176.1.S1_at--592--8451Chr09:2538556..2538580 (25 bp)
TGGCCACTGAGGATTTAGTTAAGTT
LOC_Os09g04770
OsAffx.6176.1.S1_at--253--9791Chr09:2538537..2538561 (25 bp)
TAAGTTGACAGAAGTGAACTCCAAG
LOC_Os09g04770
OsAffx.6176.1.S1_at--399--8791Chr09:2538453..2538477 (25 bp)
TGTTCACTTGACATGCTATGGTTGC
LOC_Os09g04770
OsAffx.6176.1.S1_at--1091--3311Chr09:2538449..2538473 (25 bp)
CACTTGACATGCTATGGTTGCCTTG
LOC_Os09g04770
OsAffx.6176.1.S1_at--566--5911Chr09:2538420..2538444 (25 bp)
GAGCTCAAAATACACAGCTAGCTTT
LOC_Os09g04770
Target Sequence 
TCAACTACCGCAAGTGCCATTGCAACACCGTCGCCATCCATCAAGACCAACAAAGCCGAAGGCGACATGGTTCAAGTTGA
GATGAAACCAGATGAGACATTCCAGGAGTTGTGTGCCAAGATGATTGCCATGCTCAACAGCATGCTCGTGACATGCCGCG
ACATCAAAGTTGAGTCAACCGCGAGCGTTGGTATCACCAGGGTGGTGGCAGCTACAAGCACCAACACTAAATCTATCCCC
AACACATTGGAGGTCAGTGATGATGACAATTCAATCAGCTTGGTTGATACTAATGGGTTGTGCATGGTAACAGCCACCAA
GTGTTTGACAAAAGGCAATGAACAAATGATCAATAATGATGATGACGACATGGCCACTGAGGATTTAGTTAAGTTGACAG
AAGTGAACTCCAAGTTCACAGTACTGCAAACATCCTTCAACAATCCATGGTTTGGTCATCAAGCTATTTTTGTTGTTCAC
TTGACATGCTATGGTTGCCTTGACCGGAGCTCAAAATACACAGCTAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis