Browse Element(s) Details


OsAffx.6191.1.S1_at

Description tigr:9637.m00453
TID=OsAffx.6191.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0697010/11Transport protein particle component, Bet3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06940NANA9+3347092..3347772hypothetical protein
LOC_Os09g06950Os.55510.1.S1_at10/119+3354810..3355603expressed protein
LOC_Os09g06960NANA9+3361805..3362047retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g06970Os.9241.1.S1_a_at11/119+3368503..3375004Transport protein particle component, Bet3 containing protein, expressed
LOC_Os09g06970OsAffx.6191.1.S1_at10/119+3368503..3375004Transport protein particle component, Bet3 containing protein, expressed
LOC_Os09g06970Os.34129.1.S1_x_at2/119+3368503..3375004Transport protein particle component, Bet3 containing protein, expressed
LOC_Os09g06979OsAffx.30451.1.S1_s_at8/119+3384083..3385701NA
LOC_Os09g06979OsAffx.30451.3.S1_x_at2/119+3384083..3385701NA
LOC_Os09g06979OsAffx.12135.1.S1_at1/119+3384083..3385701NA
LOC_Os09g06979OsAffx.28646.1.S1_at1/119+3384083..3385701NA
LOC_Os09g06979OsAffx.12135.1.S1_x_at1/119+3384083..3385701NA
LOC_Os09g06979OsAffx.13030.1.S1_x_at1/119+3384083..3385701NA
LOC_Os09g06990NANA9+3386610..3386951retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07000OsAffx.31811.3.S1_x_at7/119+3388902..3396159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07000OsAffx.31811.5.S1_at6/119+3388902..3396159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07000Os.45173.1.S1_x_at2/119+3388902..3396159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07000OsAffx.31811.1.S1_at2/119+3388902..3396159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07000OsAffx.28492.1.S1_at1/119+3388902..3396159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07010Os.23189.1.S1_at1/119+3398181..3402109retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6191.1.S1_at--700--4831NONE
GCTCACGGAGAGTTGGTCAAACATC
NONE
OsAffx.6191.1.S1_at--1036--7811Chr09:3370403..3370427 (25 bp)
GGTCAAACATCCCAAAATCCATTCC
LOC_Os09g06970
OsAffx.6191.1.S1_at--784--3031Chr09:3370418..3370442 (25 bp)
AATCCATTCCACTAGCTTCTGCTGA
LOC_Os09g06970
OsAffx.6191.1.S1_at--751--5051Chr09:3370443..3370467 (25 bp)
GCAGCAAGCAACCAACTACCAGACT
LOC_Os09g06970
OsAffx.6191.1.S1_at--300--1711Chr09:3370453..3370477 (25 bp)
ACCAACTACCAGACTACCAGTACGT
LOC_Os09g06970
OsAffx.6191.1.S1_at--697--9971Chr09:3370467..3370491 (25 bp)
TACCAGTACGTCCTTCAACAGCAGG
LOC_Os09g06970
OsAffx.6191.1.S1_at--691--8152Chr09:3370490..3370514 (25 bp)
GGAAACCAACCATGTGCAAGAAATG
LOC_Os09g06970
OsAffx.6191.1.S1_at--846--5491Chr09:3370531..3370555 (25 bp)
GAACAGCAGACAGGTCGGGTAGCTC
LOC_Os09g06970
OsAffx.6191.1.S1_at--876--3391Chr09:3370560..3370584 (25 bp)
CAGCTGCTGCAGTTTCGTGTATATG
LOC_Os09g06970
OsAffx.6191.1.S1_at--702--1771Chr09:3370603..3370627 (25 bp)
ACCGGGACCAACACCATCGAGCAAT
LOC_Os09g06970
OsAffx.6191.1.S1_at--540--1731Chr09:3370615..3370639 (25 bp)
ACCATCGAGCAATGGCGGTTGGCTC
LOC_Os09g06970
Target Sequence 
GCTCACGGAGAGTTGGTCAAACATCCCAAAATCCATTCCACTAGCTTCTGCTGAGCAGCAAGCAACCAACTACCAGACTA
CCAGTACGTCCTTCAACAGCAGGAAACCAACCATGTGCAAGAAATGGGAAGAAGAAGAAGATGAACAGCAGACAGGTCGG
GTAGCTCTGACCAGCTGCTGCAGTTTCGTGTATATGGGGCTGGTGGCCGGCGCCACCGGGACCAACACCATCGAGCAATG
GCGGTTGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis