Browse Element(s) Details


OsAffx.6212.1.S1_at

Description tigr:9637.m00644
TID=OsAffx.6212.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT005311 At3g10360, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0873010/11Pumilio-family RNA binding repeat containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08710Os.5199.1.S1_at11/119+4576706..4579685expressed protein
LOC_Os09g08710Os.5199.2.S1_x_at10/119+4576706..4579685expressed protein
LOC_Os09g08710Os.20593.1.S1_x_at1/119+4576706..4579685expressed protein
LOC_Os09g08720OsAffx.29770.1.S1_at11/119+4591170..4594141NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g08730OsAffx.6212.1.S1_at10/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730OsAffx.25952.1.S1_s_at2/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730Os.53576.1.S1_at1/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730Os.10259.1.S1_at1/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08740Os.46862.1.S1_at1/119+4607974..4609200hypothetical protein
LOC_Os09g08750OsAffx.22385.1.S1_x_at5/119+4609549..4614447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08750OsAffx.20329.1.S1_at3/119+4609549..4614447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08760NANA9+4621469..4621852hypothetical protein
LOC_Os09g08770OsAffx.6213.1.S1_at10/119+4624216..4627892hypothetical protein
LOC_Os09g08770OsAffx.19675.1.S1_x_at1/119+4624216..4627892hypothetical protein
LOC_Os09g08770OsAffx.19815.1.S1_at1/119+4624216..4627892hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6212.1.S1_at--513--6171Chr09:4601033..4601229 (25 bp)
GAGGACCAAATCCTTATGGTGATGG
LOC_Os09g08730
OsAffx.6212.1.S1_at--659--8131Chr09:4600944..4600968 (25 bp)
GGACTTGATAGTCATCGTCGTCAAC
LOC_Os09g08730
OsAffx.6212.1.S1_at--979--4791NONE
GCTCGCGAACACAACCATAGAATAG
NONE
OsAffx.6212.1.S1_at--847--2331Chr09:4600194..4600218 (25 bp)
AAAGAGGAGGCCACTGTCGCTACTG
LOC_Os09g08730
OsAffx.6212.1.S1_at--645--7231Chr09:4600179..4600203 (25 bp)
GTCGCTACTGCTATCAACATCATTG
LOC_Os09g08730
OsAffx.6212.1.S1_at--1068--9691Chr09:4600166..4600190 (25 bp)
TCAACATCATTGAGCGGGCCATACC
LOC_Os09g08730
OsAffx.6212.1.S1_at--476--3571Chr09:4600147..4600171 (25 bp)
CATACCCATGCTCCCAGCAGTGGAT
LOC_Os09g08730
OsAffx.6212.1.S1_at--524--1531Chr09:4600132..4600156 (25 bp)
AGCAGTGGATCCAGCTGCCCTCTTG
LOC_Os09g08730
OsAffx.6212.1.S1_at--224--6371Chr09:4600065..4600089 (25 bp)
GATCCAGCCGCTCCTGAGAGAAGAA
LOC_Os09g08730
OsAffx.6212.1.S1_at--262--1371Chr09:4599998..4600022 (25 bp)
AGAGCCATCGTCTTCCAAGCAAGTG
LOC_Os09g08730
OsAffx.6212.1.S1_at--305--2731Chr09:4599982..4600006 (25 bp)
AAGCAAGTGCAAGCGCAGGCTCCAT
LOC_Os09g08730
Target Sequence 
GAGGACCAAATCCTTATGGTGATGGTGAACGAGCATGGAAACTATGTGATACAGAAGATGTTGGAGACGGCAGCGGCGGA
GTGGGTGGTGGACTTGATAGTCATCGTCGTCAACCGCAACTTCTTCAGGCTCATCCACTACGTCCATGGCAGGCACGTCC
TCGCCCACCTCCAGATCCTTCTTGCCGCTCGCGAACACAACCATAGAATAGAGAACAAAATTAACTCAATCATAAGATCA
AGAACAAAATCAATATCCATGAACATATTCAAAGAGGAGGCCACTGTCGCTACTGCTATCAACATCATTGAGCGGGCCAT
ACCCATGCTCCCAGCAGTGGATCCAGCTGCCCTCTTGGGCGTGGCGGAGGATCGGACCACCCCCATGCGTGCGGCGGCAG
ATCCAGCCGCTCCTGAGAGAAGAAGAGGAGGGGACAACAGGACGAGCTGTCAGCAAGGAAGGGGGAAGAGCCATCGTCTT
CCAAGCAAGTGCAAGCGCAGGCTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis