Browse Element(s) Details


OsAffx.6213.1.S1_at

Description tigr:9637.m00648
TID=OsAffx.6213.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0877010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08730OsAffx.6212.1.S1_at10/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730OsAffx.25952.1.S1_s_at2/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730Os.53576.1.S1_at1/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730Os.10259.1.S1_at1/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08740Os.46862.1.S1_at1/119+4607974..4609200hypothetical protein
LOC_Os09g08750OsAffx.22385.1.S1_x_at5/119+4609549..4614447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08750OsAffx.20329.1.S1_at3/119+4609549..4614447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08760NANA9+4621469..4621852hypothetical protein
LOC_Os09g08770OsAffx.6213.1.S1_at10/119+4624216..4627892hypothetical protein
LOC_Os09g08770OsAffx.19675.1.S1_x_at1/119+4624216..4627892hypothetical protein
LOC_Os09g08770OsAffx.19815.1.S1_at1/119+4624216..4627892hypothetical protein
LOC_Os09g08780Os.46314.3.S1_at2/119+4630420..4633749transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08780OsAffx.7362.1.S1_x_at2/119+4630420..4633749transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08780OsAffx.265.1.S1_at1/119+4630420..4633749transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08790OsAffx.23366.1.S1_at1/119+4635402..4638983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08790OsAffx.23366.2.S1_s_at1/119+4635402..4638983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08799NANA9+4640262..4640532NA
LOC_Os09g08810OsAffx.8939.1.S1_at4/119+4645765..4646219hypothetical protein
LOC_Os09g08810OsAffx.8939.1.S1_x_at4/119+4645765..4646219hypothetical protein
LOC_Os09g08810OsAffx.1436.1.S1_x_at1/119+4645765..4646219hypothetical protein
LOC_Os09g08820NANA9+4650098..4651737transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6213.1.S1_at--93--3431Chr09:4624259..4624283 (25 bp)
CAGAGGTTGACTCCAATGCTTGCAT
LOC_Os09g08770
OsAffx.6213.1.S1_at--168--2611Chr09:4624473..4624497 (25 bp)
AACGCTAGCGAGGATTCAAGCCGAA
LOC_Os09g08770
OsAffx.6213.1.S1_at--493--4691Chr09:4624529..4624553 (25 bp)
GCGGCTACGATCCATACCCAAGAAG
LOC_Os09g08770
OsAffx.6213.1.S1_at--979--8231Chr09:4624576..4624600 (25 bp)
GGCAAAAGCCATGTCGCGAAGCAAA
LOC_Os09g08770
OsAffx.6213.1.S1_at--822--2571Chr09:4624599..4624623 (25 bp)
AACGGACTTCGTCGGAGATGGACCT
LOC_Os09g08770
OsAffx.6213.1.S1_at--1066--871NONE
AGGCCATATCGCGAGGTAGCACAAC
NONE
OsAffx.6213.1.S1_at--288--2591Chr09:4627595..4627619 (25 bp)
AACGAGTGAGGTTGGCCCACGTCAA
LOC_Os09g08770
OsAffx.6213.1.S1_at--504--7091Chr09:4627615..4627639 (25 bp)
GTCAACTTGCCATTGCACCTGGAGT
LOC_Os09g08770
OsAffx.6213.1.S1_at--264--9351Chr09:4627725..4627749 (25 bp)
TCGCTGTCATTGCTCACCGTGTGGA
LOC_Os09g08770
OsAffx.6213.1.S1_at--871--1771Chr09:4627740..4627764 (25 bp)
ACCGTGTGGATGTTGTTCCTAGCCC
LOC_Os09g08770
OsAffx.6213.1.S1_at--1071--6451Chr09:4627829..4627853 (25 bp)
GATCAAGTCGTTTAAGGCCGTGGTA
LOC_Os09g08770
Target Sequence 
CAGAGGTTGACTCCAATGCTTGCATGTTGTATACCACGAGGTCCTTCGACCGGACCTGCCGAAACCGAAACGCTAGCGAG
GATTCAAGCCGAAGATATGCGGCGAAGACCGCGGGGACGCCGACGCGGCTACGATCCATACCCAAGAAGGCTGCATGGGC
GAAAGCCATATGGCAAAAGCCATGTCGCGAAGCAAACGGACTTCGTCGGAGATGGACCTCGCCAGAAGAAGGCTACATGG
GCGAAGGCTGTATGACAAAGGCCATATCGCGAGGTAGCACAACGAGTGAGGTTGGCCCACGTCAACTTGCCATTGCACCT
GGAGTCGGTGGATGCCATCACCAAGAAATTGTCTGTCTTGGGGTTCTTCATGAGGACCTACCTACCCTGATCGCACTGGC
GACCAGCGTGTCGCTGTCATTGCTCACCGTGTGGATGTTGTTCCTAGCCCACAACCTTGCCAAGTCTGTCGCTGGCGTCG
AGGCGACCATCCCGAGGTTCCTCGACCTCACGCTGATCAAGTCGTTTAAGGCCGTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis