Browse Element(s) Details


OsAffx.6272.1.S1_at

Description tigr:9631.m03715
TID=OsAffx.6272.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative proteasome maturation factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1459011/11Proteasome maturation factor UMP1 family protein
LOC_Os03g3872011/11Proteasome maturation factor UMP1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14550OsAffx.6271.1.S1_at11/119+8612520..8617110Ataxin-2 C-terminal region family protein
LOC_Os09g14560OsAffx.17693.1.S1_at10/119+8622666..8625179hypothetical protein
LOC_Os09g14570OsAffx.17694.1.S1_x_at11/119+8628024..8628737tropinone reductase homolog At1g07440, putative
LOC_Os09g14570OsAffx.17694.1.S1_at11/119+8628024..8628737tropinone reductase homolog At1g07440, putative
LOC_Os09g14580OsAffx.25423.2.S1_x_at10/119+8629074..8632197Protein kinase domain containing protein
LOC_Os09g14580Os.43946.3.S1_x_at7/119+8629074..8632197Protein kinase domain containing protein
LOC_Os09g14590OsAffx.6272.1.S1_at11/119+8635423..8640334Proteasome maturation factor UMP1 family protein
LOC_Os09g14600Os.11929.1.S1_at11/119+8643136..8645464peroxisomal membrane protein, putative, expressed
LOC_Os09g14610Os.50406.1.S1_x_at11/119+8645682..8653883RNase3 domain containing protein, expressed
LOC_Os09g14610Os.28186.2.S1_s_at11/119+8645682..8653883RNase3 domain containing protein, expressed
LOC_Os09g14610Os.28186.1.S1_s_at10/119+8645682..8653883RNase3 domain containing protein, expressed
LOC_Os09g14614Os.49341.1.S1_x_at11/119+8664791..8666872expressed protein
LOC_Os09g14614Os.49341.1.S1_at10/119+8664791..8666872expressed protein
LOC_Os09g14614Os.23317.1.S1_at4/119+8664791..8666872expressed protein
LOC_Os09g14614Os.51537.1.S1_at1/119+8664791..8666872expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6272.1.S1_at--152--7712Chr09:8639788..8639812 (25 bp)
GGGTGCGGTTGCCAAATCTAGCCCC
LOC_Os09g14590
OsAffx.6272.1.S1_at--1067--10772Chr09:8639831..8639855 (25 bp)
TTGTCCGGCGCTGGAGGCTGACCCT
LOC_Os09g14590
OsAffx.6272.1.S1_at--901--3692Chr09:8640064..8640088 (25 bp)
CTATGGAAGTCCAACGCGGCGTGGC
LOC_Os09g14590
OsAffx.6272.1.S1_at--16--932Chr09:8640107..8640131 (25 bp)
AGGCAGGTCGATGCGGGTGGCACCA
LOC_Os09g14590
OsAffx.6272.1.S1_at--431--7532Chr09:8640123..8640147 (25 bp)
GTGGCACCAGCGGTAGCAGAAGGCT
LOC_Os09g14590
OsAffx.6272.1.S1_at--936--2192Chr09:8640183..8640207 (25 bp)
ACAAAGAAGCCAGCCTGACTGATGG
LOC_Os09g14590
OsAffx.6272.1.S1_at--817--2652Chr09:8640189..8640213 (25 bp)
AAGCCAGCCTGACTGATGGCGTGAA
LOC_Os09g14590
OsAffx.6272.1.S1_at--384--1972Chr09:8640200..8640224 (25 bp)
ACTGATGGCGTGAAGGTCGACGCAC
LOC_Os09g14590
OsAffx.6272.1.S1_at--935--5792Chr09:8640218..8640242 (25 bp)
GACGCACGCGCCAACGGCAAAGAAG
LOC_Os09g14590
OsAffx.6272.1.S1_at--760--852Chr09:8640255..8640279 (25 bp)
ATGGCATGGAGGTCAACACAGTGAT
LOC_Os09g14590
OsAffx.6272.1.S1_at--629--2192Chr09:8640270..8640294 (25 bp)
ACACAGTGATGACAGGGAGTCCAAT
LOC_Os09g14590
Target Sequence 
GGGTGCGGTTGCCAAATCTAGCCCCCTCTCGTTCGGATCNGGCTTGTCCGGCGCTGGAGGCTGACCCTCAAGCCACCNCC
AGCGGAGAGGTGACGNCGCGGACGTGGAGGTGGCAGNGTGAGGACTATGGAAGTCCAACGCGGCGTGGCGATGCAAGAGG
TCGATGCAGGCAGGTCGATGCGGGTGGCACCAGCGGTAGCAGAAGGCTGGCNTGGACGGCNTCGGGAGGTTGGCGCGACA
ACGACAAAGAAGCCAGCCTGACTGATGGCGTGAAGGTCGACGCACGCGCCAACGGCAAAGAAGCTNGCCTGACTGATGGC
ATGGAGGTCAACACAGTGATGACAGGGAGTCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis