Browse Element(s) Details


OsAffx.6277.1.S1_at

Description tigr:9637.m01218
TID=OsAffx.6277.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g165202/11Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16510Os.27227.1.S1_at11/119+10127836..10130089WRKY DNA binding domain containing protein, expressed
LOC_Os09g16520OsAffx.29875.1.S1_at11/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520OsAffx.29875.1.S1_s_at10/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520OsAffx.6277.1.S1_at2/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520Os.52634.1.S1_at1/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16530Os.14919.1.S1_at5/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16530OsAffx.29313.1.S1_at1/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16530Os.56216.1.S1_at1/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16540Os.53941.1.S1_at11/119+10151940..10156507Protein kinase domain containing protein, expressed
LOC_Os09g16550OsAffx.29876.1.S1_at11/119+10157596..10159953ankyrin repeat family protein, putative
LOC_Os09g16560OsAffx.17743.1.S1_at10/119+10160766..10162952hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6277.1.S1_at--116--9573Chr05:23199406..23199511 (25 bp)
TCTTCTCTCTCAAGCCTAAGGGCAA
NONE
OsAffx.6277.1.S1_at--398--2991Chr09:9023347..9023371 (25 bp)
AATGTCATTTGGCTGCGTTGTTTGA
NONE
OsAffx.6277.1.S1_at--354--4431Chr09:9023333..9023357 (25 bp)
GCGTTGTTTGACACCGTTAGAGCCA
NONE
OsAffx.6277.1.S1_at--45--6391Chr09:9022563..9022587 (25 bp)
GATCGAAGGAGCGTCACTGGTTTAA
NONE
OsAffx.6277.1.S1_at--1045--671Chr09:9022458..9022482 (25 bp)
ATGACAGCCACAATCATCAAGGCAA
NONE
OsAffx.6277.1.S1_at--784--6771Chr09:9022404..9022428 (25 bp)
GTTAGACAGACCTTTCAGGGCATCT
NONE
OsAffx.6277.1.S1_at--1064--10531Chr09:9022391..9022415 (25 bp)
TTCAGGGCATCTTTTGCATGCAGCA
NONE
OsAffx.6277.1.S1_at--122--4991Chr09:9022376..9022400 (25 bp)
GCATGCAGCAAGCTTCCGTAGCAAT
NONE
OsAffx.6277.1.S1_at--350--5191Chr09:9022356..9022380 (25 bp)
GCAATGGACGTAGATGGCACATCAG
NONE
OsAffx.6277.1.S1_at--816--7076Chr09:8925338..8925362 (25 bp)
GTAATATGTGCAGCCAACTTGTTTA
NONE
OsAffx.6277.1.S1_at--804--235Chr09:8579823..8580119 (25 bp)
ATATTTGGATGTTTACTCCTACCCA
NONE
Target Sequence 
TCTTCTCTCTCAAGCCTAAGGGCAACAATGTCATTTGGCTGCGTTGTTTGACACCGTTAGAGCCAAAAATAGACGGAATG
ATCACGGATCGAAGGAGCGTCACTGGTTTAAATTGTGCATACAATCAACAAATGCACATGACAGCCACAATCATCAAGGC
AAAGCTGTTTATGGCTGATAGTACAAGTTCTGTTAGACAGACCTTTCAGGGCATCTTTTGCATGCAGCAAGCTTCCGTAG
CAATGGACGTAGATGGCACATCAGTACTAATGATGTATAGTGATGTAATATGTGCAGCCAACTTGTTTAAGGTATTTGAA
TCATATTTGGATGTTTACTCCTACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis