Browse Element(s) Details


OsAffx.6351.1.S1_at

Description tigr:9637.m01785
TID=OsAffx.6351.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2084011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20800OsAffx.29947.1.S1_at2/119+12527112..12528106hypothetical protein
LOC_Os09g20810NANA9+12535620..12538846Strictosidine synthase family protein
LOC_Os09g20820OsAffx.6350.1.S1_at10/119+12539721..12543788Enolase, putative, expressed
LOC_Os09g20830Os.9890.1.S1_at9/119+12544956..12549095pentatricopeptide, putative, expressed
LOC_Os09g20840OsAffx.6351.1.S1_at11/119+12550172..12550639hypothetical protein
LOC_Os09g20850OsAffx.17807.1.S1_x_at11/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.17807.1.S1_at11/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.15454.1.S1_x_at1/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.15454.2.S1_x_at1/119+12554489..12555826expressed protein
LOC_Os09g20860OsAffx.17808.1.S1_s_at10/119+12557294..12560752expressed protein
LOC_Os09g20870NANA9+12562658..12563017hypothetical protein
LOC_Os09g20880Os.23225.1.A1_at11/119+12564502..12568201Protein kinase domain containing protein, expressed
LOC_Os09g20890OsAffx.17675.1.S1_at1/119+12572047..12572655retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6351.1.S1_at--767--4091Chr09:12550580..12550604 (25 bp)
CGAAGCAGACCCCATGGAAGTTGGT
LOC_Os09g20840
OsAffx.6351.1.S1_at--757--1491Chr09:12550577..12550601 (25 bp)
AGCAGACCCCATGGAAGTTGGTGGC
LOC_Os09g20840
OsAffx.6351.1.S1_at--83--8471Chr09:12550556..12550580 (25 bp)
TGGCGGCGACCCTGGAAGCGTCAAA
LOC_Os09g20840
OsAffx.6351.1.S1_at--1064--5791Chr09:12550549..12550573 (25 bp)
GACCCTGGAAGCGTCAAATCCGGTG
LOC_Os09g20840
OsAffx.6351.1.S1_at--1004--7771Chr09:12550543..12550567 (25 bp)
GGAAGCGTCAAATCCGGTGCGTCGT
LOC_Os09g20840
OsAffx.6351.1.S1_at--998--3991Chr09:12550524..12550548 (25 bp)
CGTCGTGGGTGGATCTCACCGCCGC
LOC_Os09g20840
OsAffx.6351.1.S1_at--545--4451Chr09:12550313..12550337 (25 bp)
GCCTCCAGCTTTGACCAAGGGTGGA
LOC_Os09g20840
OsAffx.6351.1.S1_at--607--5931Chr09:12550269..12550293 (25 bp)
GAGCAGTGTCCACAAGCTATGGCGT
LOC_Os09g20840
OsAffx.6351.1.S1_at--418--1111Chr09:12550265..12550289 (25 bp)
AGTGTCCACAAGCTATGGCGTGCCC
LOC_Os09g20840
OsAffx.6351.1.S1_at--1130--9071Chr09:12550228..12550252 (25 bp)
TGCTCGGTTTCTTTGCCAAAAATCG
LOC_Os09g20840
OsAffx.6351.1.S1_at--734--10311Chr09:12550221..12550245 (25 bp)
TTTCTTTGCCAAAAATCGCTGAGGG
LOC_Os09g20840
Target Sequence 
CGAAGCAGACCCCATGGAAGTTGGTGGCGGCGACCCTGGAAGCGTCAAATCCGGTGCGTCGTGGGTGGATCTCACCGCCG
CCCGTCATCACCGCCTCTCTCTCCCGTCACCGCCAACGGAGAGCGACGCGCGCGACGCGTTGGCTGCGGCGAGCGGCGTG
AGGGGTCTGTCGGCCGGCGACGAGTGGCGTGAGCGACGCCAGATCCGCTCATCGCCGCACTTTCCCATTCTCTTCCCCGC
CGACTCCGGCTCGTCCACCACCTCGCCGCCTCCAGCTTTGACCAAGGGTGGAAAGGGAATACGGGTGTGGGGAGCAGTGT
CCACAAGCTATGGCGTGCCCAACGCGGCTCCTTGCTCGGTTTCTTTGCCAAAAATCGCTGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis