Browse Element(s) Details


OsAffx.6387.1.S1_at

Description tigr:9637.m02118
TID=OsAffx.6387.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=84160-81473
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2468011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24630OsAffx.17878.1.S1_at6/119+14660674..14663151hypothetical protein
LOC_Os09g24640Os.8268.1.S1_at11/119+14665246..14666808pentatricopeptide, putative, expressed
LOC_Os09g24650Os.16405.1.S1_at11/119+14670645..14675767Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g24660Os.47978.1.A1_at11/119+14676524..14680075zinc finger motif, C2HC5-type family protein, expressed
LOC_Os09g24670Os.5442.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24670OsAffx.17879.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24680OsAffx.6387.1.S1_at11/119+14686747..14689179pentatricopeptide, putative
LOC_Os09g24690Os.11043.1.S1_x_at11/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24690Os.11043.2.S1_at9/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24700Os.5722.1.S1_at11/119+14693433..14698067expressed protein
LOC_Os09g24700Os.5722.2.S1_at11/119+14693433..14698067expressed protein
LOC_Os09g24710Os.38084.2.S1_x_at11/119+14710642..14715764hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g24710Os.38084.1.S1_at10/119+14710642..14715764hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6387.1.S1_at--1089--5311Chr09:14687320..14687344 (25 bp)
GAAGGTGTACTCCAGAAGTGGCAAT
LOC_Os09g24680
OsAffx.6387.1.S1_at--355--7531Chr09:14687303..14687327 (25 bp)
GTGGCAATATGGATGATTCTCGTAA
LOC_Os09g24680
OsAffx.6387.1.S1_at--184--1111Chr09:14687262..14687286 (25 bp)
AGTGTCCCAGACTTAGTTGCATGGA
LOC_Os09g24680
OsAffx.6387.1.S1_at--1152--3831Chr09:14687120..14687144 (25 bp)
CTGCATGCAGCCGTAATGGTTTAGT
LOC_Os09g24680
OsAffx.6387.1.S1_at--1050--6651Chr09:14687049..14687073 (25 bp)
GTTGAGCCAGAGTTACAGCACTACT
LOC_Os09g24680
OsAffx.6387.1.S1_at--171--2071Chr09:14687008..14687032 (25 bp)
ACTTGGTCGATCTGGGAGGCTTGCA
LOC_Os09g24680
OsAffx.6387.1.S1_at--1026--8871Chr09:14686940..14686964 (25 bp)
TGATGGTATGGAGCACCCTACTTGC
LOC_Os09g24680
OsAffx.6387.1.S1_at--37--4311Chr09:14686924..14686948 (25 bp)
CCTACTTGCTGCTTGCAGAGTTCAT
LOC_Os09g24680
OsAffx.6387.1.S1_at--852--8831Chr09:14686900..14686924 (25 bp)
TGATGACACTGTACTTGGACGGTTT
LOC_Os09g24680
OsAffx.6387.1.S1_at--848--151Chr09:14686850..14686874 (25 bp)
ATTATGATTCAGGTTCCTTTGCAAC
LOC_Os09g24680
OsAffx.6387.1.S1_at--842--5151Chr09:14686830..14686854 (25 bp)
GCAACTCTGTCGAACATTCTTGCGA
LOC_Os09g24680
Target Sequence 
GAAGGTGTACTCCAGAAGTGGCAATATGGATGATTCTCGTAAAGTTTTTGATGAAATAAGTGTCCCAGACTTAGTTGCAT
GGACCACTATAATTGATGGGTATGCTCAGCATGGAAGTAGTCAGAATGCATTGGCAATGTTTGATTTGATGGTTCAGCTT
GGGGTAAGACCAGATACTGTTGTATTAGTGAGTGTTTTGTCTGCATGCAGCCGTAATGGTTTAGTTGAGCAAGGTTTTAA
CTATTTTAATTCAATGAGAACTGCATATGGGGTTGAGCCAGAGTTACAGCACTACTGTTGCATGGTTGATTTACTTGGTC
GATCTGGGAGGCTTGCAGAGGCAAAATATTTTGTTGATAGCATGCCTATGAAACCAGACTTGATGGTATGGAGCACCCTA
CTTGCTGCTTGCAGAGTTCATGATGACACTGTACTTGGACGGTTTGTAGAAAATAAGATCCGTGAAGGAAATTATGATTC
AGGTTCCTTTGCAACTCTGTCGAACATTCTTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis