Browse Element(s) Details


OsAffx.6388.1.S1_at

Description tigr:9631.m05442
TID=OsAffx.6388.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5575011/11hypothetical protein
LOC_Os11g392104/11hypothetical protein
LOC_Os01g643204/11hypothetical protein
LOC_Os09g219802/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55704OsAffx.13497.1.S1_s_at11/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50619.1.S1_x_at1/113+31654897..31660831expressed protein
LOC_Os03g55704OsAffx.4992.1.S1_at1/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50619.1.S1_at1/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50196.2.S1_x_at1/113+31654897..31660831expressed protein
LOC_Os03g55720Os.12837.1.S1_at11/113+31664100..31664825cytochrome b6f complex subunit, putative, expressed
LOC_Os03g55730Os.11614.1.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.1.S1_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.1.S1_a_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.2.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.2.S1_x_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.38505.1.S1_x_at2/113+31664942..31671202expressed protein
LOC_Os03g55734Os.13536.1.S1_at11/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55734Os.11519.2.S1_x_at1/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55740NANA3+31674717..31675175prolamin, putative, expressed
LOC_Os03g55750OsAffx.6388.1.S1_x_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55750OsAffx.6388.1.S1_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55760Os.55608.1.S1_at11/113+31688428..31694221myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55770Os.428.1.S1_at2/113+31694949..31695203expressed protein
LOC_Os03g55784Os.4995.1.S1_at7/113+31697109..31700416expressed protein
LOC_Os03g55784Os.8266.2.S1_at7/113+31697109..31700416expressed protein
LOC_Os03g55800Os.8266.1.A1_at11/113+31703932..31705926Cytochrome P450 74A1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6388.1.S1_at--30--6413Chr09:14729521..14729545 (25 bp)
GATCTGGCGTCGCTGAAGCTAGGAC
NONE
OsAffx.6388.1.S1_at--145--5016Chr09:14729547..14729571 (25 bp)
GCAGGATCTGGAGCACCCAAACTCG
NONE
OsAffx.6388.1.S1_at--272--9476Chr09:14729553..14729577 (25 bp)
TCTGGAGCACCCAAACTCGGGATGG
NONE
OsAffx.6388.1.S1_at--230--8554Chr09:14729555..14729579 (25 bp)
TGGAGCACCCAAACTCGGGATGGTT
NONE
OsAffx.6388.1.S1_at--735--5914Chr09:14729557..14729581 (25 bp)
GAGCACCCAAACTCGGGATGGTTGG
NONE
OsAffx.6388.1.S1_at--166--2555Chr09:14729566..14729590 (25 bp)
AACTCGGGATGGTTGGATCCGCGAC
NONE
OsAffx.6388.1.S1_at--752--9435Chr09:14729569..14729593 (25 bp)
TCGGGATGGTTGGATCCGCGACCTC
NONE
OsAffx.6388.1.S1_at--8--6633Chr09:14729577..14729601 (25 bp)
GTTGGATCCGCGACCTCTGAGTTCA
NONE
OsAffx.6388.1.S1_at--708--9454Chr09:14729613..14729637 (25 bp)
TCTGGAGCCCCCGAGTTCATGGTTG
NONE
OsAffx.6388.1.S1_at--182--6074Chr09:14729625..14729649 (25 bp)
GAGTTCATGGTTGCTGGGACCGTCA
NONE
OsAffx.6388.1.S1_at--7--10434Chr09:14729628..14729652 (25 bp)
TTCATGGTTGCTGGGACCGTCAGGG
NONE
Target Sequence 
GATCTGGCGTCGCTGAAGCTAGGACNGCAGGATCTGGAGCACCCAAACTCGGGATGGTTGGATCCGCGACCTCTGAGTTC
ANGGTGTCCNGATCTGGAGCCCCCGAGTTCATGGTTGCTGGGACCGTCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis