Browse Element(s) Details


OsAffx.6482.1.S1_at

Description tigr:9637.m02976
TID=OsAffx.6482.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TCP family transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3495011/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34900Os.48834.1.S1_at11/119+20336705..20340024bile acid:sodium symporter family protein, putative, expressed
LOC_Os09g34910Os.11357.1.S1_at11/119+20342307..20346711DEAD/DEAH box helicase family protein, expressed
LOC_Os09g34920Os.5109.1.S1_at11/119+20348465..20350420glycosyl hydrolase family 29, putative, expressed
LOC_Os09g34930Os.18431.1.S1_at11/119+20356971..20358605very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os09g34940OsAffx.6481.1.S1_at11/119+20358979..20360200hypothetical protein
LOC_Os09g34950OsAffx.6482.1.S1_x_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34950OsAffx.6482.1.S1_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34960Os.6789.1.S1_at11/119+20366844..20370873Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os09g34970Os.15713.1.S2_a_at11/119+20371289..20374723Arsenical pump-driving ATPase, putative, expressed
LOC_Os09g34980Os.51759.1.S1_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34980Os.51759.2.S1_s_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34990NANA9+20383626..20387289SPX domain-containing protein, putative
LOC_Os09g35000Os.25479.1.S1_at11/119+20389470..20393425DNA repair protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6482.1.S1_at--746--8353Chr09:20363824..20363848 (25 bp)
GGCGGCGGCTCGATCTCAATATCCA
LOC_Os09g34950
OsAffx.6482.1.S1_at--1132--4692Chr09:20363820..20363844 (25 bp)
GCGGCTCGATCTCAATATCCAGCGG
LOC_Os09g34950
OsAffx.6482.1.S1_at--308--9392Chr09:20363815..20363839 (25 bp)
TCGATCTCAATATCCAGCGGCCTCG
LOC_Os09g34950
OsAffx.6482.1.S1_at--1146--4592Chr09:20363686..20363710 (25 bp)
GCGACCGTGTGGATGGTCCCGCCCG
LOC_Os09g34950
OsAffx.6482.1.S1_at--338--4571Chr09:20363658..20363682 (25 bp)
GCGCAGGCGCCGTGAACCAGCCAAT
LOC_Os09g34950
OsAffx.6482.1.S1_at--1121--4551Chr09:20363652..20363676 (25 bp)
GCGCCGTGAACCAGCCAATTCAGTA
LOC_Os09g34950
OsAffx.6482.1.S1_at--95--1711Chr09:20363640..20363664 (25 bp)
AGCCAATTCAGTACTGGGCGTTCCA
LOC_Os09g34950
OsAffx.6482.1.S1_at--35--3191Chr09:20363637..20363661 (25 bp)
CAATTCAGTACTGGGCGTTCCAACC
LOC_Os09g34950
OsAffx.6482.1.S1_at--520--8251Chr09:20363565..20363589 (25 bp)
GGCAGAATCCCGGTGTCCACGAGGC
LOC_Os09g34950
OsAffx.6482.1.S1_at--512--1471Chr09:20363562..20363586 (25 bp)
AGAATCCCGGTGTCCACGAGGCGAG
LOC_Os09g34950
OsAffx.6482.1.S1_at--836--531Chr09:20363559..20363583 (25 bp)
ATCCCGGTGTCCACGAGGCGAGCGC
LOC_Os09g34950
Target Sequence 
GGCGGCGGCTCGATCTCAATATCCAGCGGCCTCGCCCCCGCCTCATCCGCAACACCACCCACAGCCACCGGAGGCGGCGC
CATCCCGTTCATCGCCATGCCGGCAACCAGCGACGGCGGCAAGCAGGCGATGTCACCGGCGACCGTGTGGATGGTCCCGC
CCGGCGGCGCAGGCGCCGTGAACCAGCCAATTCAGTACTGGGCGTTCCAACCCAACCCTGACCACGCCAACTTCGCCGGC
GCCTCCAGCTACAACGTGGGGCAGAATCCCGGTGTCCACGAGGCGAGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis