Browse Element(s) Details


OsAffx.6586.1.S1_at

Description tigr:9638.m00487
TID=OsAffx.6586.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0574011/11hypothetical protein
LOC_Os04g395201/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05700OsAffx.8864.1.S1_at11/1110+2858350..2858901retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05710Os.46273.1.S1_at11/1110+2860114..2866525retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05730Os.18851.2.A1_at11/1110+2869442..2873929Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g05730Os.18851.1.A1_at10/1110+2869442..2873929Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g05720OsAffx.30305.1.S1_at11/1110+2869612..2870662Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g05740OsAffx.6586.1.S1_at11/1110+2878546..2880179hypothetical protein
LOC_Os10g05750Os.8203.1.S1_at11/1110+2881765..2883207proline-rich protein, putative, expressed
LOC_Os10g05770OsAffx.20747.1.S1_at10/1110+2889282..2892519hypothetical protein
LOC_Os10g05770OsAffx.14013.2.S1_at2/1110+2889282..2892519hypothetical protein
LOC_Os10g05780Os.46723.1.S1_at7/1110+2896902..2898861POT family protein, expressed
LOC_Os10g05780OsAffx.29868.1.S1_at1/1110+2896902..2898861POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6586.1.S1_at--811--4731Chr10:2880079..2880103 (25 bp)
GCTGTCAAGTTGTATGCTCTCTCAC
LOC_Os10g05740
OsAffx.6586.1.S1_at--1062--3091Chr10:2879982..2880006 (25 bp)
AATACCGGAGGCTTGTGTCATCCAT
LOC_Os10g05740
OsAffx.6586.1.S1_at--864--2551Chr10:2879955..2879979 (25 bp)
AACTGCAACTGTACCTGGGATTCCC
LOC_Os10g05740
OsAffx.6586.1.S1_at--450--231Chr10:2878959..2878983 (25 bp)
ATATTTACAGCATCACGGTCGGGAA
LOC_Os10g05740
OsAffx.6586.1.S1_at--510--3971Chr10:2878944..2878968 (25 bp)
CGGTCGGGAATCTCTGCTAGGTGTT
LOC_Os10g05740
OsAffx.6586.1.S1_at--566--10352Chr04:23308923..23308942 (20 bp)
TTTATCTTCGCGATTAGGGCCACCG
LOC_Os04g39520
OsAffx.6586.1.S1_at--593--1091Chr10:2878716..2878893 (25 bp)
AGGGCCACCGTGTTTATCAGCATGA
LOC_Os10g05740
OsAffx.6586.1.S1_at--1015--852Chr03:30322592..30322614 (23 bp)
ATGGCATCCCAGATTTTCCTTGTAT
NONE
OsAffx.6586.1.S1_at--970--10671Chr10:2878650..2878674 (25 bp)
TTCCTTGTATATCTGCAATCCGCCA
LOC_Os10g05740
OsAffx.6586.1.S1_at--895--7991Chr10:2878615..2878639 (25 bp)
GGATGTCTCATCTGTGCACCGGCAA
LOC_Os10g05740
OsAffx.6586.1.S1_at--101--8151Chr10:2878587..2878611 (25 bp)
GGACAAACGCCGTTGTTTTGCCAGC
LOC_Os10g05740
Target Sequence 
GCTGTCAAGTTGTATGCTCTCTCACCAGCACGAGTATCTCGCTTGTGGTCAAGGTGGCCTCGACATATCCTCGCTCATCA
ACGACCTCACCGTCAAAAATACCGGAGGCTTGTGTCATCCATCCAACTGCAACTGTACCTGGGATTCCCACGCCGGAGAG
GAAGAAGAGAAGATATGAGAGGGGCAGTGAGGTAAGGAAAAAAATATTTACAGCATCACGGTCGGGAATCTCTGCTAGGT
GTTTGGCTCCAGCCATAGCCCAAGATTTCGCCTCTTCCTTTATCTTCGCGATTAGGGCCACCGTGTTTATCAGCATGATG
GGTTCACAGGCAACCCAAGTAGCAATGGCATCCCAGATTTTCCTTGTATATCTGCAATCCGCCAGCAGATGTAGGGATGT
CTCATCTGTGCACCGGCAAAGGGGACAAACGCCGTTGTTTTGCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis