Browse Element(s) Details


OsAffx.6710.1.S1_at

Description tigr:9638.m01702
TID=OsAffx.6710.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2056010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20510Os.25521.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510OsAffx.18309.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_x_at10/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_at9/1110+10005999..10011288expressed protein
LOC_Os10g20520OsAffx.30462.1.S1_at11/1110+10012486..10012787hypothetical protein
LOC_Os10g20530OsAffx.20486.1.S1_at11/1110+10018428..10019190hypothetical protein
LOC_Os10g20540OsAffx.20485.1.S1_at11/1110+10022517..10025503hypothetical protein
LOC_Os10g20550Os.9663.1.S1_at10/1110+10026433..10027152expressed protein
LOC_Os10g20560OsAffx.6710.1.S1_at10/1110+10028725..10029871hypothetical protein
LOC_Os10g20570NANA10+10035111..10039348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20580Os.27691.1.S1_x_at2/1110+10039925..10041108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20580Os.27691.2.S1_x_at1/1110+10039925..10041108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20590OsAffx.30463.1.S1_at11/1110+10045464..10047228hypothetical protein
LOC_Os10g20600Os.38168.2.S1_x_at11/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38168.2.S1_at10/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38168.1.S1_at7/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600OsAffx.18185.1.S1_s_at4/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600OsAffx.18311.1.S1_at3/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38368.1.S1_s_at2/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6710.1.S1_at--285--10571Chr10:10028762..10028786 (25 bp)
TTCTTCTCTTGCTGGCAAATCCTAC
LOC_Os10g20560
OsAffx.6710.1.S1_at--1094--8231Chr10:10028775..10028794 (20 bp)
GGCAAATCCTACTTCTGCTGATGAG
LOC_Os10g20560
OsAffx.6710.1.S1_at--1044--9111NONE
TGCTGATGAGCTTGATCCCGGCACC
NONE
OsAffx.6710.1.S1_at--102--10751Chr10:10029678..10029702 (25 bp)
TTGATCCCGGCACCTGCGGAACGGA
LOC_Os10g20560
OsAffx.6710.1.S1_at--541--1751Chr10:10029689..10029713 (25 bp)
ACCTGCGGAACGGAGGTCGATCCGT
LOC_Os10g20560
OsAffx.6710.1.S1_at--773--1031Chr10:10029702..10029726 (25 bp)
AGGTCGATCCGTTGGACCCCTGCAT
LOC_Os10g20560
OsAffx.6710.1.S1_at--318--4991Chr10:10029723..10029747 (25 bp)
GCATCCAGACGCTGTGCAAGTGGAA
LOC_Os10g20560
OsAffx.6710.1.S1_at--831--7711Chr10:10029772..10029796 (25 bp)
GGGTGGCCATCTCACCTCTTACGAA
LOC_Os10g20560
OsAffx.6710.1.S1_at--611--9671Chr10:10029783..10029807 (25 bp)
TCACCTCTTACGAATGCGGAGACCG
LOC_Os10g20560
OsAffx.6710.1.S1_at--607--8051Chr10:10029800..10029824 (25 bp)
GGAGACCGAGAATGCAAGTGCGATT
LOC_Os10g20560
OsAffx.6710.1.S1_at--573--2851Chr10:10029815..10029839 (25 bp)
AAGTGCGATTTCTGCGCCAGTAGCA
LOC_Os10g20560
Target Sequence 
TTCTTCTCTTGCTGGCAAATCCTACTTCTGCTGATGAGCTTGATCCCGGCACCTGCGGAACGGAGGTCGATCCGTTGGAC
CCCTGCATCCAGACGCTGTGCAAGTGGAACTGCGAGCTGGTGGCCATGAAACGGGGTGGCCATCTCACCTCTTACGAATG
CGGAGACCGAGAATGCAAGTGCGATTTCTGCGCCAGTAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis