Browse Element(s) Details


OsAffx.6932.1.S1_at

Description tigr:9638.m03718
TID=OsAffx.6932.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative PPR repeat protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4092011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40840OsAffx.21375.2.S1_x_at11/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.21375.2.S1_at11/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.23250.2.S1_x_at1/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.23143.3.S1_x_at1/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40859OsAffx.30740.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20138.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20140.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40880OsAffx.30741.1.S1_at11/1110+21639238..21640814oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40890OsAffx.7914.1.S1_at11/1110+21642155..21647340retrotransposon protein, putative, unclassified
LOC_Os10g40900OsAffx.20137.1.S1_at11/1110+21649422..21652233oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40900Os.13877.1.S1_at1/1110+21649422..21652233oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40920OsAffx.6932.1.S1_at11/1110+21654252..21657630pentatricopeptide, putative, expressed
LOC_Os10g40934Os.28435.4.S1_x_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.1.S1_a_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.5.S1_x_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.4.S1_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.5.S1_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.23290.2.S1_x_at2/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40950Os.46622.1.S1_x_at11/1110+21664458..21665479Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40950OsAffx.26978.1.S1_at1/1110+21664458..21665479Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40960Os.23290.2.S1_s_at11/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.23290.2.S1_x_at10/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.23290.1.S1_at10/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.28435.5.S1_at1/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.28435.5.S1_x_at1/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6932.1.S1_at--565--1991Chr10:21657061..21657085 (25 bp)
ACTCCTGAAGTGTTCGTTGCGGTTA
LOC_Os10g40920
OsAffx.6932.1.S1_at--927--4671Chr10:21657079..21657103 (25 bp)
GCGGTTATTTCAGTACAAGCATGTC
LOC_Os10g40920
OsAffx.6932.1.S1_at--674--1171Chr10:21657155..21657179 (25 bp)
AGTAATGTCATGTCCCTGTAGCGAG
LOC_Os10g40920
OsAffx.6932.1.S1_at--555--2471Chr10:21657195..21657219 (25 bp)
AACACATAGCTTGTGCCCTATACAG
LOC_Os10g40920
OsAffx.6932.1.S1_at--1010--1311Chr10:21657228..21657252 (25 bp)
AGAGGCCCTTGACCAAAAGCGCAGA
LOC_Os10g40920
OsAffx.6932.1.S1_at--1115--711Chr10:21657350..21657374 (25 bp)
ATGATTCCAATAATGAGCTCGCTGA
LOC_Os10g40920
OsAffx.6932.1.S1_at--151--5911Chr10:21657364..21657388 (25 bp)
GAGCTCGCTGATTTTGTGTGTACAA
LOC_Os10g40920
OsAffx.6932.1.S1_at--1092--1431Chr10:21657452..21657476 (25 bp)
AGAAGTTCGGTTCAACTGTTGTCCA
LOC_Os10g40920
OsAffx.6932.1.S1_at--606--9011Chr10:21657484..21657508 (25 bp)
TGCAAGGTCCTTGGCTACATGTGAC
LOC_Os10g40920
OsAffx.6932.1.S1_at--136--10411Chr10:21657525..21657549 (25 bp)
TTATTCAGATCATGCACACTCCTTG
LOC_Os10g40920
OsAffx.6932.1.S1_at--512--8491Chr10:21657548..21657572 (25 bp)
TGGCTACATGTCTTTGCCTACATTT
LOC_Os10g40920
Target Sequence 
ACTCCTGAAGTGTTCGTTGCGGTTATTTCAGTACAAGCATGTCCTTGTTGACCTTACAGAAGCATGCAACTGGAAAACTG
TTGGCGTTAGAGCAAGTAATGTCATGTCCCTGTAGCGAGTGATGTGGAGTGATGAACACATAGCTTGTGCCCTATACAGG
CTTGAATAGAGGCCCTTGACCAAAAGCGCAGAAGAATAAGTGTACGTGCGGTGCACGCCCTTTCCTCAGAACAGGGACAC
AAAAAGTAATACAGACCATCCCCAAACAACATGCACACAGAAGGAAAAAATGATTCCAATAATGAGCTCGCTGATTTTGT
GTGTACAACAGAATCTGAAGATTATATACTTGTGAACCTGATATTTTATGAGAAACTTTGAGAACAGGATGAGAAGTTCG
GTTCAACTGTTGTCCAGAAAAGATGCAAGGTCCTTGGCTACATGTGACCAAGAGAGGCATAATTTTATTCAGATCATGCA
CACTCCTTGGCTACATGTCTTTGCCTACATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis