Browse Element(s) Details


OsAffx.7006.1.S1_at

Description tigr:9639.m00474
TID=OsAffx.7006.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0559011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05556Os.49423.1.S1_at11/1111+2513385..2517848Signal recognition particle 54 kDa protein, chloroplast precursor, putative, expressed
LOC_Os11g05562Os.9376.1.S1_at10/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05562OsAffx.29659.1.S1_at9/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05570Os.54312.1.S1_at11/1111+2525648..2528553ribonuclease HI large subunit, putative, expressed
LOC_Os11g05580OsAffx.18690.1.S1_at11/1111+2530443..2531819hypothetical protein
LOC_Os11g05590OsAffx.7006.1.S1_at11/1111+2532826..2534187hypothetical protein
LOC_Os11g05600Os.53499.1.S1_at11/1111+2535682..2538894expressed protein
LOC_Os11g05614Os.54623.1.S2_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05614Os.54623.1.S1_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05630OsAffx.30829.2.S1_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05630OsAffx.30829.2.S1_x_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05640OsAffx.18691.1.S1_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05640Os.57499.1.S1_x_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7006.1.S1_at--519--10251Chr11:2533401..2533425 (25 bp)
TTTGTCCATGAATTCTTCACCACCA
LOC_Os11g05590
OsAffx.7006.1.S1_at--840--6711Chr11:2533355..2533379 (25 bp)
GTTCGGCGAGGGTCACGGCATCATC
LOC_Os11g05590
OsAffx.7006.1.S1_at--1116--3551Chr11:2533337..2533361 (25 bp)
CATCATCGGATTGGGCGGCAGTGAC
LOC_Os11g05590
OsAffx.7006.1.S1_at--584--8211Chr11:2533284..2533308 (25 bp)
GGCAACCACGGGTACCACCTGAGGT
LOC_Os11g05590
OsAffx.7006.1.S1_at--508--8491Chr11:2533151..2533175 (25 bp)
TGAGCAACCTTATCACGGTCAGGGT
LOC_Os11g05590
OsAffx.7006.1.S1_at--827--2071Chr11:2533082..2533106 (25 bp)
ACATAGGCGACGACCAGGCTCTCTT
LOC_Os11g05590
OsAffx.7006.1.S1_at--394--8251Chr11:2533036..2533060 (25 bp)
GGCACTCCGATTGCCGGACAACAAT
LOC_Os11g05590
OsAffx.7006.1.S1_at--166--831Chr11:2532998..2533022 (25 bp)
ATGGATTTCTCCGAGGCAACCGCGT
LOC_Os11g05590
OsAffx.7006.1.S1_at--979--411Chr11:2532969..2532993 (25 bp)
ATCGTGGGATCCGATTTGGGCCGAC
LOC_Os11g05590
OsAffx.7006.1.S1_at--318--4771Chr11:2532908..2532932 (25 bp)
GCTGCTCATGCGGTGTGTATGACAT
LOC_Os11g05590
OsAffx.7006.1.S1_at--1108--3511Chr11:2532886..2532910 (25 bp)
CATGAGCAATGGCAGGTTCAGCACG
LOC_Os11g05590
Target Sequence 
TTTGTCCATGAATTCTTCACCACCACCGCCGCCGATCGCGGCGGCGGTTCGGCGAGGGTCACGGCATCATCGGATTGGGC
GGCAGTGACCGACGCGCGGCCTCCGAGGGAGCACCTCGGCAACCACGGGTACCACCTGAGGTTCACCTCCTACCTCGTCG
CGTCGCTCGCCGGCAAGCTGCTGCTGGTCCGGTGGAGCCTCCCCGACGAGCTGTTCTCCGGCGAGGGGGGGCGCCTCGCC
TTCTCCCTGCTGAGCAACCTTATCACGGTCAGGGTGTTCGAGGCGGACATGGAGGCGCGGCGGTGGACGGAGGTGACGGA
CATAGGCGACGACCAGGCTCTCTTCGTCAGCGCGACCTGCTCCAGGGCACTCCGATTGCCGGACAACAATGGCGGCGGCC
GCCATGGATTTCTCCGAGGCAACCGCGTGTTCATCGTGGGATCCGATTTGGGCCGACGCTGCGGCGGCGGCGGCGGTGGC
ATTGGCTGCTGCTGCTGCTCATGCGGTGTGTATGACATGAGCAATGGCAGGTTCAGCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis