Browse Element(s) Details


OsAffx.7027.1.S1_at

Description tigr:9639.m00620
TID=OsAffx.7027.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0685011/11hypothetical protein
LOC_Os04g013543/11Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06810Os.10074.1.S1_at11/1111+3328352..3334865expressed protein
LOC_Os11g06810Os.5907.1.A1_at1/1111+3328352..3334865expressed protein
LOC_Os11g06820OsAffx.7026.1.S1_x_at11/1111+3338876..3340595AUX1-like permease; 10674-8589, putative, expressed
LOC_Os11g06820OsAffx.7026.1.S1_at11/1111+3338876..3340595AUX1-like permease; 10674-8589, putative, expressed
LOC_Os11g06830OsAffx.28175.1.S1_s_at11/1111+3348224..3348672hypothetical protein
LOC_Os11g06830OsAffx.28175.1.S1_x_at1/1111+3348224..3348672hypothetical protein
LOC_Os11g06840Os.57118.1.S1_at11/1111+3353344..3355631Zinc finger, C2H2 type family protein, expressed
LOC_Os11g06850OsAffx.7027.1.S1_at11/1111+3359042..3360008hypothetical protein
LOC_Os11g06860Os.24716.1.A1_at9/1111+3363066..3364801expressed protein
LOC_Os11g06870Os.55115.1.S1_at11/1111+3364890..3366775Glyoxal oxidase N-terminus family protein, expressed
LOC_Os11g06880Os.23734.1.A1_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06880OsAffx.18713.1.S1_x_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06890Os.5512.1.S1_at10/1111+3373934..3376213Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os11g06900Os.14121.1.S1_at11/1111+3378293..3384774Amidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7027.1.S1_at--143--4031Chr11:3359482..3359818 (25 bp)
CGTATCCCCGCGGAAGCTGGAAGAT
LOC_Os11g06850
OsAffx.7027.1.S1_at--396--10151Chr11:3359484..3359820 (25 bp)
TATCCCCGCGGAAGCTGGAAGATCA
LOC_Os11g06850
OsAffx.7027.1.S1_at--202--9311Chr11:3359486..3359822 (25 bp)
TCCCCGCGGAAGCTGGAAGATCACA
LOC_Os11g06850
OsAffx.7027.1.S1_at--596--8191Chr11:3359812..3359836 (25 bp)
GGAAGATCACATCCAAATGATCATT
LOC_Os11g06850
OsAffx.7027.1.S1_at--105--391Chr11:3359817..3359841 (25 bp)
ATCACATCCAAATGATCATTGCATG
LOC_Os11g06850
OsAffx.7027.1.S1_at--895--3531Chr11:3359821..3359845 (25 bp)
CATCCAAATGATCATTGCATGTGTT
LOC_Os11g06850
OsAffx.7027.1.S1_at--663--8831Chr11:3359829..3359853 (25 bp)
TGATCATTGCATGTGTTAGGGACGC
LOC_Os11g06850
OsAffx.7027.1.S1_at--185--432Chr11:3359831..3359855 (25 bp)
ATCATTGCATGTGTTAGGGACGCGC
LOC_Os11g06850
OsAffx.7027.1.S1_at--839--3592Chr11:3359833..3359857 (25 bp)
CATTGCATGTGTTAGGGACGCGCAC
LOC_Os11g06850
OsAffx.7027.1.S1_at--787--10715Chr11:3359835..3359859 (25 bp)
TTGCATGTGTTAGGGACGCGCACGC
LOC_Os11g06850
OsAffx.7027.1.S1_at--483--3513Chr11:3359838..3359862 (25 bp)
CATGTGTTAGGGACGCGCACGCGTG
LOC_Os11g06850
Target Sequence 
CGTATCCCCGCGGAAGCTGGAAGATCACATCCAAATGATCATTGCATGTGTTAGGGACGCGCACGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7027.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis