Browse Element(s) Details


OsAffx.7131.1.S1_at

Description tigr:9639.m01592
TID=OsAffx.7131.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1736010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17310Os.46012.2.S1_x_at7/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.46012.3.S1_x_at6/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.27088.1.A1_x_at5/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.54691.1.S1_x_at1/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17320OsAffx.18895.1.S1_at10/1111+9636728..9638137hypothetical protein
LOC_Os11g17330OsAffx.31015.1.S1_at11/1111+9641016..9645366NB-ARC domain containing protein
LOC_Os11g17330OsAffx.31015.2.S1_s_at11/1111+9641016..9645366NB-ARC domain containing protein
LOC_Os11g17340NANA11+9650873..9651283hypothetical protein
LOC_Os11g17350NANA11+9652410..9653420expressed protein
LOC_Os11g17360OsAffx.7131.1.S1_at10/1111+9654069..9655199hypothetical protein
LOC_Os11g17370OsAffx.22848.4.S1_x_at2/1111+9657427..9659542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17370OsAffx.22848.4.S1_at2/1111+9657427..9659542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17370OsAffx.22848.3.S1_x_at1/1111+9657427..9659542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17380OsAffx.7132.1.S1_at11/1111+9666331..9673120Protein kinase domain containing protein
LOC_Os11g17380OsAffx.8160.1.S1_x_at1/1111+9666331..9673120Protein kinase domain containing protein
LOC_Os11g17390OsAffx.30226.2.S1_s_at2/1111+9674737..9679437retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7131.1.S1_at--858--5891Chr11:9654967..9654991 (25 bp)
GAGCTGTCATCGGTGTTGTCATCAA
LOC_Os11g17360
OsAffx.7131.1.S1_at--1049--491Chr11:9654959..9654983 (25 bp)
ATCGGTGTTGTCATCAACCATCGGC
LOC_Os11g17360
OsAffx.7131.1.S1_at--331--1152Chr11:9654876..9654900 (25 bp)
AGTCGTTTCTCTGCCGATGACAAGC
LOC_Os11g17360
OsAffx.7131.1.S1_at--233--5611Chr11:9654858..9654882 (25 bp)
GACAAGCTCGGCCTTGTCATCGTTG
LOC_Os11g17360
OsAffx.7131.1.S1_at--989--8471Chr11:9654844..9654868 (25 bp)
TGTCATCGTTGCCAGTGCCAATCGC
LOC_Os11g17360
OsAffx.7131.1.S1_at--1071--7271Chr11:9654830..9654854 (25 bp)
GTGCCAATCGCGCATTCGTCGTCAA
LOC_Os11g17360
OsAffx.7131.1.S1_at--432--31NONE
ATTCGTCGTCAACACTAGAAGGGCG
NONE
OsAffx.7131.1.S1_at--66--10031Chr11:9654229..9654253 (25 bp)
TAGAAGGGCGATTCTACCCCATCAC
LOC_Os11g17360
OsAffx.7131.1.S1_at--513--4331Chr11:9654211..9654235 (25 bp)
CCATCACCAGTGACCACAAGCTTGG
LOC_Os11g17360
OsAffx.7131.1.S1_at--3--2713Chr11:9654194..9654218 (25 bp)
AAGCTTGGCATCTCTACCGACGAGG
LOC_Os11g17360
OsAffx.7131.1.S1_at--223--1631Chr11:9654102..9654126 (25 bp)
AGCGAAGACCGATGACAACGACCAG
LOC_Os11g17360
Target Sequence 
GAGCTGTCATCGGTGTTGTCATCAACCATCGGCGTCTATCCTCCCGGCTGCCACCAATGGCGAACCTGTCCCTGGTCATC
GTCCTGGCGCCAGTCGTTTCTCTGCCGATGACAAGCTCGGCCTTGTCATCGTTGCCAGTGCCAATCGCGCATTCGTCGTC
AACACTAGAAGGGCGATTCTACCCCATCACCAGTGACCACAAGCTTGGCATCTCTACCGACGAGGCTGTGGACCGTTGTC
GGCGCCCACACACATCTACACCACCATCACCGTCATGCATGGGAGAACGTGAAGCGAAGACCGATGACAACGACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis