Browse Element(s) Details


OsAffx.7145.1.S1_at

Description tigr:9639.m01707
TID=OsAffx.7145.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1848011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18420NANA11+10374409..10376058retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g18430NANA11+10377367..10379170retrotransposon protein, putative, unclassified
LOC_Os11g18440NANA11+10379975..10380451retrotransposon protein, putative, unclassified
LOC_Os11g18450OsAffx.3761.1.S1_x_at1/1111+10380870..10384750hypothetical protein
LOC_Os11g18450OsAffx.19577.1.A1_at1/1111+10380870..10384750hypothetical protein
LOC_Os11g18470OsAffx.18923.1.S1_at11/1111+10394387..10395504hypothetical protein
LOC_Os11g18480OsAffx.7145.1.S1_at11/1111+10397702..10399827hypothetical protein
LOC_Os11g18490OsAffx.30891.1.S1_x_at2/1111+10403581..10404297hypothetical protein
LOC_Os11g18500OsAffx.7146.1.S1_at11/1111+10405778..10408635hypothetical protein
LOC_Os11g18500OsAffx.29376.1.S1_x_at1/1111+10405778..10408635hypothetical protein
LOC_Os11g18510Os.46314.2.S1_x_at6/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18510OsAffx.22421.1.S1_at3/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18510Os.47114.1.S1_x_at1/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18510OsAffx.32036.1.S1_at1/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18510Os.10731.2.A1_at1/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18520OsAffx.22421.2.S1_at2/1111+10417433..10419371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18520OsAffx.22421.3.S1_at1/1111+10417433..10419371transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7145.1.S1_at--984--2511Chr11:10398509..10398533 (25 bp)
AACTTGATGCTACGGCTTTTGCTGT
LOC_Os11g18480
OsAffx.7145.1.S1_at--317--8771Chr11:10398487..10398511 (25 bp)
TGTTTGGCTTTCACCTATGTTGTCC
LOC_Os11g18480
OsAffx.7145.1.S1_at--1051--10672Chr07:17535260..17535302 (24 bp)
TTGCCTATGTCCTTGGTTTCGGTAA
NONE
OsAffx.7145.1.S1_at--704--6791Chr11:10398406..10398430 (25 bp)
GTAAGCCCGGCCAAAGGTCCTTGTG
LOC_Os11g18480
OsAffx.7145.1.S1_at--30--10471Chr11:10398033..10398057 (25 bp)
TTACTGGGTGGCAGGCGAACCGTCA
LOC_Os11g18480
OsAffx.7145.1.S1_at--182--9972Chr11:10397978..10398002 (25 bp)
TAGCGTCACTTTCACTTTTACCTCT
LOC_Os11g18480
OsAffx.7145.1.S1_at--677--10431Chr11:10397961..10397985 (25 bp)
TTACCTCTAGTCACTTTTACCATCT
LOC_Os11g18480
OsAffx.7145.1.S1_at--1027--4631Chr11:10397904..10397928 (25 bp)
GCGTTCACGAGATTTCATTGCCTAC
LOC_Os11g18480
OsAffx.7145.1.S1_at--872--9591Chr11:10397890..10397914 (25 bp)
TCATTGCCTACTTCGACCAGTGTGA
LOC_Os11g18480
OsAffx.7145.1.S1_at--926--1391Chr11:10397840..10397864 (25 bp)
AGACTTTTCATCCATGGACCCTTGT
LOC_Os11g18480
OsAffx.7145.1.S1_at--743--9451Chr11:10397748..10397772 (25 bp)
TCGGCGCTTCGCTTATCGATAAGAC
LOC_Os11g18480
Target Sequence 
AACTTGATGCTACGGCTTTTGCTGTTTGGCTTTCACCTATGTTGTCCCTTCGACCTTCGCCACTTGCCTCCAGCCTACGC
CTTTGCCTATGTCCTTGGTTTCGGTAAGCCCGGCCAAAGGTCCTTGTGGTATACCTCCAACAAGCCCCTCAAGGGCAAGG
CCTTAACGGGAAATTACCGTTCCGTACACCCTGGCGACACGTGGCAGTCCCTTACTGGGTGGCAGGCGAACCGTCACGCG
GGTGGGTTATATATACACTTACCCCCTAGCGTCACTTTCACTTTTACCTCTAGTCACTTTTACCATCTCCTCTGTGGCTG
GTATCGCTTTGTTTCTCCTTGCGTTCACGAGATTTCATTGCCTACTTCGACCAGTGTGACCTCGGCTCTTATACCGGGCT
TTCCAGACTTTTCATCCATGGACCCTTGTAAACCTGCTCCTGCTTCGGCCACTGGTCCTGATCCGGGGAAGATTGGTGAA
GGTCACATCAGGTATCTCGGCGCTTCGCTTATCGATAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis