Browse Element(s) Details


OsAffx.7146.1.S1_at

Description tigr:9639.m01709
TID=OsAffx.7146.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1850011/11hypothetical protein
LOC_Os09g040301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18450OsAffx.3761.1.S1_x_at1/1111+10380870..10384750hypothetical protein
LOC_Os11g18450OsAffx.19577.1.A1_at1/1111+10380870..10384750hypothetical protein
LOC_Os11g18470OsAffx.18923.1.S1_at11/1111+10394387..10395504hypothetical protein
LOC_Os11g18480OsAffx.7145.1.S1_at11/1111+10397702..10399827hypothetical protein
LOC_Os11g18490OsAffx.30891.1.S1_x_at2/1111+10403581..10404297hypothetical protein
LOC_Os11g18500OsAffx.7146.1.S1_at11/1111+10405778..10408635hypothetical protein
LOC_Os11g18500OsAffx.29376.1.S1_x_at1/1111+10405778..10408635hypothetical protein
LOC_Os11g18510Os.46314.2.S1_x_at6/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18510OsAffx.22421.1.S1_at3/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18510Os.47114.1.S1_x_at1/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18510OsAffx.32036.1.S1_at1/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18510Os.10731.2.A1_at1/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18520OsAffx.22421.2.S1_at2/1111+10417433..10419371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18520OsAffx.22421.3.S1_at1/1111+10417433..10419371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18530NANA11+10425952..10426428hypothetical protein
LOC_Os11g18540NANA11+10426720..10427385transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7146.1.S1_at--417--3911Chr11:10408581..10408605 (25 bp)
CTGGATGGGCTGGATCAATCGCTTA
LOC_Os11g18500
OsAffx.7146.1.S1_at--903--3031Chr11:10408565..10408589 (25 bp)
AATCGCTTAAGCTGGGTTGGGCCTC
LOC_Os11g18500
OsAffx.7146.1.S1_at--571--3891Chr11:10408554..10408578 (25 bp)
CTGGGTTGGGCCTCAGCTGCTGCAA
LOC_Os11g18500
OsAffx.7146.1.S1_at--1069--9092Chr11:21265780..21265804 (25 bp)
TGCTGCAACCGAGCTATGTAACGGA
NONE
OsAffx.7146.1.S1_at--677--1371Chr11:10408513..10408537 (25 bp)
AGAGCTGAGGGAGTTTGCAAACGTT
LOC_Os11g18500
OsAffx.7146.1.S1_at--911--6031Chr11:10408488..10408512 (25 bp)
GAGATCAAATCTAACGGTTCTGGAA
LOC_Os11g18500
OsAffx.7146.1.S1_at--15--8211Chr11:10408467..10408491 (25 bp)
GGAATTTGTGGTGACGTGGCTTCAT
LOC_Os11g18500
OsAffx.7146.1.S1_at--196--1911Chr11:10408454..10408478 (25 bp)
ACGTGGCTTCATGTGAGGGCTGCTT
LOC_Os11g18500
OsAffx.7146.1.S1_at--710--7371Chr11:10408442..10408466 (25 bp)
GTGAGGGCTGCTTTATAGGTGTTAA
LOC_Os11g18500
OsAffx.7146.1.S1_at--461--6193Chr09:2071299..2071319 (21 bp)
GAGGACATCCAAGTCAAGGTGACGA
LOC_Os09g04030
OsAffx.7146.1.S1_at--615--4751Chr11:10405828..10405852 (25 bp)
GCTGACTGTGTCAGTGTTGACGGTC
LOC_Os11g18500
Target Sequence 
CTGGATGGGCTGGATCAATCGCTTAAGCTGGGTTGGGCCTCAGCTGCTGCAACCGAGCTATGTAACGGAGAGCTGAGGGA
GTTTGCAAACGTTGAGATCAAATCTAACGGTTCTGGAATTTGTGGTGACGTGGCTTCATGTGAGGGCTGCTTTATAGGTG
TTAATGATCTTAGTAGGTCATTGAACAATAGAAGGGGAAAGGAGACACTTGGGAAAGGACTTAGAGTCATGGAGGATCAT
CGAGGACATCCAAGTCAAGGTGACGATGATGAGAGGACTGCCCAGGACTTTGCTGACTGTGTCAGTGTTGACGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis