Browse Element(s) Details


OsAffx.7164.1.S1_at

Description tigr:9639.m01908
TID=OsAffx.7164.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2035011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20330Os.55142.1.S1_at11/1111+11722598..11734403expressed protein
LOC_Os11g20330OsAffx.7163.1.S1_at10/1111+11722598..11734403expressed protein
LOC_Os11g20330Os.53011.1.S1_x_at2/1111+11722598..11734403expressed protein
LOC_Os11g20330OsAffx.25473.1.S1_at1/1111+11722598..11734403expressed protein
LOC_Os11g20330Os.53011.1.S1_at1/1111+11722598..11734403expressed protein
LOC_Os11g20350OsAffx.7164.1.S1_at11/1111+11749749..11750090hypothetical protein
LOC_Os11g20360Os.52156.1.S1_at11/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20360Os.52156.1.S2_at10/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20370OsAffx.31074.1.S1_at11/1111+11761586..11762300hypothetical protein
LOC_Os11g20384Os.49833.1.S1_at11/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384Os.49833.1.S2_at10/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384OsAffx.21285.1.S1_at3/1111+11763776..11779422SacI homology domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7164.1.S1_at--304--9371Chr11:11749816..11749840 (25 bp)
TCGAGCTAGCTCTGGGATGGCCTCA
LOC_Os11g20350
OsAffx.7164.1.S1_at--495--3711Chr11:11749821..11749845 (25 bp)
CTAGCTCTGGGATGGCCTCAGGTGC
LOC_Os11g20350
OsAffx.7164.1.S1_at--507--10831Chr11:11749848..11749872 (25 bp)
TTGGTCTCGGCGACGGCAACCAGCT
LOC_Os11g20350
OsAffx.7164.1.S1_at--526--8231Chr11:11749862..11749886 (25 bp)
GGCAACCAGCTCACAAAGCGGCGGA
LOC_Os11g20350
OsAffx.7164.1.S1_at--667--2671Chr11:11749877..11749901 (25 bp)
AAGCGGCGGATCTATTGTTCCTAGC
LOC_Os11g20350
OsAffx.7164.1.S1_at--759--7951Chr11:11749884..11749908 (25 bp)
GGATCTATTGTTCCTAGCCCCGGGA
LOC_Os11g20350
OsAffx.7164.1.S1_at--77--3711Chr11:11749897..11749921 (25 bp)
CTAGCCCCGGGACGAATCTGCCGTT
LOC_Os11g20350
OsAffx.7164.1.S1_at--988--7751Chr11:11749932..11749956 (25 bp)
GGTGCGGCAGGTCTCGGCGGTGGTA
LOC_Os11g20350
OsAffx.7164.1.S1_at--112--7711Chr11:11749982..11750006 (25 bp)
GGGTGGATCCGCTGCCCCAACTTTG
LOC_Os11g20350
OsAffx.7164.1.S1_at--581--4371Chr11:11749998..11750022 (25 bp)
CCAACTTTGGGTGCGACAGTTCTCA
LOC_Os11g20350
OsAffx.7164.1.S1_at--582--5651Chr11:11750012..11750036 (25 bp)
GACAGTTCTCAATAGCGGCGACGAC
LOC_Os11g20350
Target Sequence 
TCGAGCTAGCTCTGGGATGGCCTCAGGTGCGGTTGGTCTCGGCGACGGCAACCAGCTCACAAAGCGGCGGATCTATTGTT
CCTAGCCCCGGGACGAATCTGCCGTTCCCAGCCTCAGGTGCGGCAGGTCTCGGCGGTGGTAGATCTGGTGCCCTCGGCCC
TAGGAGGGGTGGATCCGCTGCCCCAACTTTGGGTGCGACAGTTCTCAATAGCGGCGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis