Browse Element(s) Details


OsAffx.719.1.S1_x_at

Description gb:NM_193338.1
DB_XREF= gi:34913759
GEN=OSJNBa0051H17.28
TID=OsAffx.719.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0051H17.28 (OSJNBa0051H17.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3650011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36440NANA1+20555149..20557212retrotransposon protein, putative, unclassified
LOC_Os01g36450OsAffx.21249.1.S1_at9/111+20561404..20562873transposon protein, putative, unclassified
LOC_Os01g36450Os.25438.1.A1_at2/111+20561404..20562873transposon protein, putative, unclassified
LOC_Os01g36460Os.10115.1.S1_at11/111+20567386..20569587Myb-related protein Hv33, putative, expressed
LOC_Os01g36460Os.57514.1.S1_x_at1/111+20567386..20569587Myb-related protein Hv33, putative, expressed
LOC_Os01g36470OsAffx.11348.2.S1_x_at11/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.2.S1_s_at11/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.1.S1_x_at7/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.1.S1_at4/111+20572238..20572864expressed protein
LOC_Os01g36480OsAffx.11349.1.S1_at11/111+20576093..20576875hypothetical protein
LOC_Os01g36490OsAffx.23529.1.S1_at11/111+20578181..20578490hypothetical protein
LOC_Os01g36500OsAffx.719.1.S1_x_at11/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.3.S1_at10/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.1.S1_s_at8/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.4.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.9446.1.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.8277.2.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36510OsAffx.9013.1.S1_x_at11/111+20589075..20590880hypothetical protein
LOC_Os01g36520OsAffx.11351.1.S1_at10/111+20592580..20594071hypothetical protein
LOC_Os01g36530NANA1+20602596..20604968transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36540OsAffx.23530.1.S1_at11/111+20607702..20609411pentatricopeptide, putative, expressed
LOC_Os01g36550OsAffx.21248.1.S1_x_at10/111+20611294..20614312Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.719.1.S1_x_at--896--1511Chr01:20583990..20584014 (25 bp)
AGCAGGCAACATTCTATTGGACCAT
LOC_Os01g36500
OsAffx.719.1.S1_x_at--581--4031Chr01:20583741..20583765 (25 bp)
CGAGGGCCTTTTCTCAATCAAATCT
LOC_Os01g36500
OsAffx.719.1.S1_x_at--198--371Chr01:20583663..20583687 (25 bp)
ATCAAGTTTTCATCGGCATGGAGAC
LOC_Os01g36500
OsAffx.719.1.S1_x_at--818--8051Chr01:20583644..20583668 (25 bp)
GGAGACTTTATCAACCTTCTTGGAC
LOC_Os01g36500
OsAffx.719.1.S1_x_at--1150--1731Chr01:20583401..20583655 (25 bp)
ACCTTCTTGGACACGCATGGCAGAT
LOC_Os01g36500
OsAffx.719.1.S1_x_at--65--2791Chr01:20583272..20583296 (25 bp)
AAGAGAATGCCGCAGATCGACCCAC
LOC_Os01g36500
OsAffx.719.1.S1_x_at--287--6391Chr01:20583258..20583282 (25 bp)
GATCGACCCACTATGTCAGAGGTTG
LOC_Os01g36500
OsAffx.719.1.S1_x_at--351--6651Chr01:20583237..20583261 (25 bp)
GTTGTTGCGATGCTAACCAGCGAGA
LOC_Os01g36500
OsAffx.719.1.S1_x_at--40--2651Chr01:20583223..20583247 (25 bp)
AACCAGCGAGAGTATGACCCTACCT
LOC_Os01g36500
OsAffx.719.1.S1_x_at--146--9791Chr01:20583193..20583217 (25 bp)
TAAGTACCCTGCTTTTTACCACATG
LOC_Os01g36500
OsAffx.719.1.S1_x_at--663--3871Chr01:20583143..20583167 (25 bp)
CTGTTATTATGGTATCTAGTGCTAA
LOC_Os01g36500
Target Sequence 
AGCAGGCAACATTCTATTGGACCATGAAATGAACCCTAAAATTTCAGATTTTGGGCTTGCAAAAATATTTAGCACAAATG
ATACTGAAGGGAATACAAAAAGGATCGTCGGGACCTATGGTTATATGGCTCCAGAGTATGCTTCCGAGGGCCTTTTCTCA
ATCAAATCTGATGTATTCAGCTTCGGTGTGCTAATTCTCGAGACTGTCAGTGGAAAAAGAACATCAAGTTTTCATCGGCA
TGGAGACTTTATCAACCTTCTTGGACACGCATGGCAGATGTGGAAAGATGAAACATGGCTTCAACTCGTAGATACATCAT
TAGTAATAGAGTCTCATACACCAGAGATGGCACGATGTATTAACATTGCTTTGCTTTGTGTGCAAGAGAATGCCGCAGAT
CGACCCACTATGTCAGAGGTTGTTGCGATGCTAACCAGCGAGAGTATGACCCTACCTGAGCCTAAGTACCCTGCTTTTTA
CCACATGAGGGTGACAAAGGAAGAGCCATCAACTGTTATTATGGTATCTAGTGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.719.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis