Browse Element(s) Details


OsAffx.7233.1.S1_at

Description tigr:9639.m02553
TID=OsAffx.7233.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2832011/11hypothetical protein
LOC_Os01g268601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g270101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28280OsAffx.7232.1.S1_at10/1111+15767413..15769103hypothetical protein
LOC_Os11g28280OsAffx.17666.1.S1_at1/1111+15767413..15769103hypothetical protein
LOC_Os11g28290NANA11+15771296..15772461transposon protein, putative, Pong sub-class
LOC_Os11g28300Os.8952.1.S1_at11/1111+15773640..15777993Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os11g28310OsAffx.31179.1.S1_at11/1111+15780072..15780839P21-Rho-binding domain containing protein
LOC_Os11g28320OsAffx.7233.1.S1_at11/1111+15789429..15790234hypothetical protein
LOC_Os11g28330OsAffx.31180.1.S1_at11/1111+15793308..15795195hypothetical protein
LOC_Os11g28340Os.16375.1.S1_at11/1111+15804006..15807788ER lumen protein retaining receptor, putative, expressed
LOC_Os11g28340Os.22994.1.S1_at1/1111+15804006..15807788ER lumen protein retaining receptor, putative, expressed
LOC_Os11g28350Os.47963.1.S1_at11/1111+15807906..15810405CDK-activating kinase assembly factor MAT1 family protein, expressed
LOC_Os11g28360Os.54773.1.S1_at11/1111+15815169..15819625Ubiquitin carboxyl-terminal hydrolase 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7233.1.S1_at--1093--1391Chr11:15789464..15789886 (25 bp)
AGACAGGAAGCTTCGAGCACTGCCT
LOC_Os11g28320
OsAffx.7233.1.S1_at--74--5951Chr11:15789877..15789900 (24 bp)
GAGCACTGCCTGTCACATTTGTCAT
LOC_Os11g28320
OsAffx.7233.1.S1_at--237--6711Chr11:15789946..15789970 (25 bp)
GTTCTTTATTCTTACCAAACTTGAT
LOC_Os11g28320
OsAffx.7233.1.S1_at--624--2391Chr11:15789962..15789986 (25 bp)
AAACTTGATCTTGGGCTCCTTGGCT
LOC_Os11g28320
OsAffx.7233.1.S1_at--739--10851Chr11:15789981..15790005 (25 bp)
TTGGCTATTCGGCTTGGCTTGAATC
LOC_Os11g28320
OsAffx.7233.1.S1_at--719--8291Chr11:15789996..15790020 (25 bp)
GGCTTGAATCCCGATGGACAGCGAG
LOC_Os11g28320
OsAffx.7233.1.S1_at--974--7173Chr11:15790092..15790116 (25 bp)
GTCTGATGGAGGTCGTGCTCCTAAA
LOC_Os11g28320
OsAffx.7233.1.S1_at--442--5071Chr11:15790127..15790151 (25 bp)
GCAGCGGTAGCTACTTTCAGGGCAT
LOC_Os11g28320
OsAffx.7233.1.S1_at--18--10531Chr11:15790142..15790166 (25 bp)
TTCAGGGCATCGCACGTCATGGAAA
LOC_Os11g28320
OsAffx.7233.1.S1_at--458--2311Chr11:15790165..15790189 (25 bp)
AAAGGACGATGACAACGGCAGTTTT
LOC_Os11g28320
OsAffx.7233.1.S1_at--758--3251Chr11:15790177..15790201 (25 bp)
CAACGGCAGTTTTGCAAGCAGCGAT
LOC_Os11g28320
Target Sequence 
AGACAGGAAGCTTCGAGCACTGCCTGTCACATTTGTCATCCAAACATTGTTTAGCCATGATTTAAGACGTGAAAAGATGA
TTTTGTTCTTTATTCTTACCAAACTTGATCTTGGGCTCCTTGGCTATTCGGCTTGGCTTGAATCCCGATGGACAGCGAGG
GTGAGTGGGCGTGGGTGCGATGGCCGGTGGAGGTGGGACACCGTGGCGGCGGTGGCAGATGAGGAGGTATGTCTGATGGA
GGTCGTGCTCCTAAAAGAAAGGGCGGCAGCGGTAGCTACTTTCAGGGCATCGCACGTCATGGAAAAGGACGATGACAACG
GCAGTTTTGCAAGCAGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis