Browse Element(s) Details


OsAffx.7282.1.S1_at

Description tigr:9639.m03007
TID=OsAffx.7282.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3304010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33000Os.11519.1.S1_a_at9/1111+19007782..19008414prolamin, putative, expressed
LOC_Os11g33000Os.11519.2.S1_x_at6/1111+19007782..19008414prolamin, putative, expressed
LOC_Os11g33000Os.38505.1.S1_x_at1/1111+19007782..19008414prolamin, putative, expressed
LOC_Os11g33010Os.26886.1.S1_x_at7/1111+19010714..19013605transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33010Os.26886.3.S1_x_at5/1111+19010714..19013605transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33020Os.26886.2.S1_s_at7/1111+19016431..19019526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33020Os.26886.6.S1_s_at5/1111+19016431..19019526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33020OsAffx.16467.1.S1_at4/1111+19016431..19019526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33030Os.53931.1.S1_at11/1111+19022276..19023743C2 domain containing protein, expressed
LOC_Os11g33040OsAffx.7282.1.S1_at10/1111+19027282..19028799hypothetical protein
LOC_Os11g33050OsAffx.7283.1.S1_at9/1111+19032360..19033202expressed protein
LOC_Os11g33060NANA11+19043587..19046715retrotransposon protein, putative, unclassified
LOC_Os11g33070NANA11+19047200..19053350retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7282.1.S1_at--846--3331Chr11:19028741..19028765 (25 bp)
CACGTGTACCGCATTCATGGTCAAT
LOC_Os11g33040
OsAffx.7282.1.S1_at--299--7951Chr11:19028657..19028681 (25 bp)
GGATAGGCGACCAATCAGCGAGCAA
LOC_Os11g33040
OsAffx.7282.1.S1_at--627--211Chr11:19028148..19028172 (25 bp)
ATTTGGTTTAGACTCGTGACGACGA
LOC_Os11g33040
OsAffx.7282.1.S1_at--129--1251Chr11:19028095..19028119 (25 bp)
AGTTGAAACTCTGGTCTCTGCCTCT
LOC_Os11g33040
OsAffx.7282.1.S1_at--198--5971NONE
GAGAAGAGACAACCAGCGCTCCTGC
NONE
OsAffx.7282.1.S1_at--828--7491Chr11:19027468..19027492 (25 bp)
GTGGTGGATGATGCTCCTTCAGCTC
LOC_Os11g33040
OsAffx.7282.1.S1_at--330--1731Chr11:19027425..19027449 (25 bp)
ACCAGTGGCCTAGATGCAGCTACAA
LOC_Os11g33040
OsAffx.7282.1.S1_at--574--7311Chr11:19027391..19027415 (25 bp)
GTGCTGTGCCATCGTTTGACCGAGA
LOC_Os11g33040
OsAffx.7282.1.S1_at--260--8931Chr11:19027375..19027399 (25 bp)
TGACCGAGACCGACCAAATTTTTTG
LOC_Os11g33040
OsAffx.7282.1.S1_at--470--2711Chr11:19027338..19027362 (25 bp)
AAGCATAACCACGAGCTCCAGTTAA
LOC_Os11g33040
OsAffx.7282.1.S1_at--451--10471Chr11:19027317..19027341 (25 bp)
TTAATTAACTGGTCTACTCCTCCTG
LOC_Os11g33040
Target Sequence 
CACGTGTACCGCATTCATGGTCAATGGTGGGAAAGGGTTTAACTGGGGACAAGGTAGCGGTCAGAACGGGGTTTGTCCCA
GAGAGGATAGGCGACCAATCAGCGAGCAACACAGAAACCATCCTGATTTGGTTTAGACTCGTGACGACGATGTTTAAAAT
GCCCCCTGTGAGGTTGAAAGTTGAAACTCTGGTCTCTGCCTCTCTGGAGAAGAGACAACCAGCGCTCCTGCTCCCCACAT
GGCCATGGTGGTGGATGATGCTCCTTCAGCTCCAGCAACCACTACTCACCACCAGTGGCCTAGATGCAGCTACAAACTGC
GCCCGTGCTGTGCCATCGTTTGACCGAGACCGACCAAATTTTTTGTCAACTAGTAAAAAGCATAACCACGAGCTCCAGTT
AATTAACTGGTCTACTCCTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis