Browse Element(s) Details


OsAffx.7446.1.S1_at

Description tigr:9639.m04486
TID=OsAffx.7446.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cyclin, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4795010/11Cyclin, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47910NANA11+28337184..28338971GRAS family transcription factor containing protein
LOC_Os11g47920NANA11+28341012..28342793GRAS family transcription factor containing protein
LOC_Os11g47930Os.14762.2.S1_x_at6/1111+28343996..28346570expressed protein
LOC_Os11g47930Os.14762.1.S1_x_at1/1111+28343996..28346570expressed protein
LOC_Os11g47930Os.14762.3.S1_x_at1/1111+28343996..28346570expressed protein
LOC_Os11g47930OsAffx.24274.1.S1_at1/1111+28343996..28346570expressed protein
LOC_Os11g47930Os.18172.1.S1_s_at1/1111+28343996..28346570expressed protein
LOC_Os11g47940NANA11+28355908..28359106hypothetical protein
LOC_Os11g47944NANA11+28360913..28361757Thaumatin family protein
LOC_Os11g47950OsAffx.7446.1.S1_at10/1111+28363415..28365589Cyclin, N-terminal domain containing protein
LOC_Os11g47960OsAffx.7447.1.S1_at11/1111+28374523..28374975hypothetical protein
LOC_Os11g47970Os.11573.7.A1_x_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.2.A2_a_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.2.A1_a_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.5.A1_x_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47980OsAffx.19434.1.S1_at11/1111+28380025..28381904expressed protein
LOC_Os11g47980Os.22640.1.A1_at1/1111+28380025..28381904expressed protein
LOC_Os11g47990OsAffx.27915.1.S1_at4/1111+28382689..28382952hypothetical protein
LOC_Os11g48000OsAffx.19436.1.S1_at11/1111+28389298..28390942Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000080biological_processG1 phase of mitotic cell cycle
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005634cellular_componentnucleus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7446.1.S1_at--575--9331Chr11:28364809..28364833 (25 bp)
TCGCCTGCAAGCTCGACGAAGTCAC
LOC_Os11g47950
OsAffx.7446.1.S1_at--552--7571Chr11:28364588..28364612 (25 bp)
GGGCGTCCACCATCCGGGACATGGA
LOC_Os11g47950
OsAffx.7446.1.S1_at--87--7631Chr11:28364573..28364597 (25 bp)
GGGACATGGAGCTCACGCTGCTCAA
LOC_Os11g47950
OsAffx.7446.1.S1_at--104--10731Chr11:28364414..28364438 (25 bp)
TTGCTGCCTCTGCTCTTACTTTATC
LOC_Os11g47950
OsAffx.7446.1.S1_at--769--10571NONE
TTCTCCCAGACGGACCATGAGGTGA
NONE
OsAffx.7446.1.S1_at--295--2351Chr11:28363558..28363582 (25 bp)
AAAGCACTTCACTTGGATATGTCCA
LOC_Os11g47950
OsAffx.7446.1.S1_at--404--1031Chr11:28363522..28363546 (25 bp)
AGGTCTAGTGACCATCCGTGCTGGA
LOC_Os11g47950
OsAffx.7446.1.S1_at--210--7291Chr11:28363505..28363529 (25 bp)
GTGCTGGAGCCCGATTTCAGTAGTA
LOC_Os11g47950
OsAffx.7446.1.S1_at--414--191Chr11:28363492..28363516 (25 bp)
ATTTCAGTAGTAATTCCCTTCCACA
LOC_Os11g47950
OsAffx.7446.1.S1_at--670--4311Chr11:28363476..28363500 (25 bp)
CCTTCCACACTGACGGTACAGTTAA
LOC_Os11g47950
OsAffx.7446.1.S1_at--1057--6431Chr11:28363449..28363473 (25 bp)
GATCAGCAATAAGCCGATGTCTATT
LOC_Os11g47950
Target Sequence 
TCGCCTGCAAGCTCGACGAAGTCACCATCCCCTCGCTCCACGACCTTCAGATGGAGGAGGCGATGGGGCACTCGTTCCGG
GCGTCCACCATCCGGGACATGGAGCTCACGCTGCTCAAGGCTCTCCGCTGGCGCCTCGCCTGCGTCACCCCTTTCTCCTT
CCTCCCCGTTACTACTACTACTACAACTACTAGGGCCCTCCTCCTCCGCTCCCTCTTGGATCCCTCCTTTCTCCGCTTTG
ATGCCTCGCTGCTTGCTGCCTCTGCTCTTACTTTATCCTCTACTACACCACAACACCCCAATCATCTCCTCCTCAACCGC
CTCATTCATCCTTTCTCCCAGACGGACCATGAGGTGAAGGAATGCTTCAACATGATGAAAGCACTTCACTTGGATATGTC
CAAAAATCCTGGCAGGTCTAGTGACCATCCGTGCTGGAGCCCGATTTCAGTAGTAATTCCCTTCCACACTGACGGTACAG
TTAAGAGATCAGCAATAAGCCGATGTCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis