Browse Element(s) Details


OsAffx.7464.1.S1_s_at

Description tigr:9640.m00180
TID=OsAffx.7464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ATPase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0275011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02710Os.54077.1.S1_at11/1112+946150..949199expressed protein
LOC_Os12g02720Os.53587.1.S1_at11/1112+953506..954644eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os12g02730Os.17056.1.A1_at11/1112+965058..968456expressed protein
LOC_Os12g02730Os.40337.1.S1_s_at5/1112+965058..968456expressed protein
LOC_Os12g02750OsAffx.7464.1.S1_s_at11/1112+970331..974926expressed protein
LOC_Os12g02750Os.53770.1.S1_at10/1112+970331..974926expressed protein
LOC_Os12g02750OsAffx.7464.1.S1_at8/1112+970331..974926expressed protein
LOC_Os12g02760Os.54328.1.S1_at11/1112+974104..976096expressed protein
LOC_Os12g02770NANA12+977181..977828retrotransposon protein, putative, unclassified
LOC_Os12g02780NANA12+979692..981314retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02790NANA12+985410..986157expressed protein
LOC_Os12g02800Os.52568.1.S1_s_at11/1112+987599..988874expressed protein
LOC_Os12g02800Os.52568.1.S1_at11/1112+987599..988874expressed protein
LOC_Os12g02810Os.12636.1.S1_at11/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os12g02810OsAffx.18642.1.S1_at1/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os12g02810Os.54274.1.S1_at1/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7464.1.S1_s_at--509--4151Chr12:970384..970527 (25 bp)
CGCCCTGGTCATATCCTTTATTTCT
LOC_Os12g02750
OsAffx.7464.1.S1_s_at--1067--7131Chr12:971126..971150 (25 bp)
GTCTTGTGAAACTATTTGCTGATCT
LOC_Os12g02750
OsAffx.7464.1.S1_s_at--374--10711Chr12:971141..971165 (25 bp)
TTGCTGATCTTAGCCCTGATGAGAC
LOC_Os12g02750
OsAffx.7464.1.S1_s_at--356--3871Chr12:971156..971180 (25 bp)
CTGATGAGACTCGTGATTTGTGGAT
LOC_Os12g02750
OsAffx.7464.1.S1_s_at--66--1011Chr12:971189..971213 (25 bp)
AGGATATTGGTGTACGTGTTGAGCA
LOC_Os12g02750
OsAffx.7464.1.S1_s_at--216--5931Chr12:971209..971233 (25 bp)
GAGCAGTACCAGAGGGCTTCTTCGC
LOC_Os12g02750
OsAffx.7464.1.S1_s_at--159--10572Chr12:971226..971250 (25 bp)
TTCTTCGCTCACATTCACAATTCAG
LOC_Os12g02750
OsAffx.7464.1.S1_s_at--1071--952Chr12:971479..971503 (25 bp)
AGGACGGACCTCACTCTGGCCAAAC
LOC_Os12g02750
OsAffx.7464.1.S1_s_at--505--3912Chr12:971494..971518 (25 bp)
CTGGCCAAACAGTTCCACATGTTCA
LOC_Os12g02750
OsAffx.7464.1.S1_s_at--776--3512Chr12:971525..971549 (25 bp)
CATCGTTCCCCGAAGGAAGGAAGAT
LOC_Os12g02750
OsAffx.7464.1.S1_s_at--361--252Chr12:973627..973651 (25 bp)
ATATCTTTCGAATCTTTCTGAGAGG
LOC_Os12g02750
Target Sequence 
CGCCCTGGTCATATCCTTTATTTCTGCCAATTATGTAGTCTTGTGAAACTATTTGCTGATCTTAGCCCTGATGAGACTCG
TGATTTGTGGATCATGGCAAAGGATATTGGTGTACGTGTTGAGCAGTACCAGAGGGCTTCTTCGCTCACATTCACAATTC
AGTTGAATAAATATTGCTACTTATCAGGACGGACCTCACTCTGGCCAAACAGTTCCACATGTTCACGTTCACATCGTTCC
CCGAAGGAAGGAAGATTTTGAGAACAATGATAACAATAATGGCATGATGAATGCAAAAAACGAGACATTAGACCTGGATA
TTGAAAGAAAAGATAGAACGATGGAAGAAATGGCCCAAGAAGCCAAAGAATATCGTGCTCTTTTCTCCTAGAAAATGTCT
ATTATATTGTCAATATCTTTCGAATCTTTCTGAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7464.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis