Browse Element(s) Details


OsAffx.7487.1.S1_at

Description tigr:9640.m00436
TID=OsAffx.7487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0519011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05160OsAffx.19503.1.S1_at11/1112+2280167..2281290Transposable element protein, putative, RnaseH
LOC_Os12g05170NANA12+2285745..2286920expressed protein
LOC_Os12g05180Os.20300.1.S1_at11/1112+2287583..2289545expressed protein
LOC_Os12g05190OsAffx.7487.1.S1_at11/1112+2299628..2300793hypothetical protein
LOC_Os12g05190OsAffx.23706.1.S1_at2/1112+2299628..2300793hypothetical protein
LOC_Os12g05200OsAffx.31589.1.S1_s_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.31589.1.S1_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.27256.1.S1_s_at4/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.25712.1.S1_at2/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05210Os.51775.1.S1_x_at11/1112+2311451..2312218expressed protein
LOC_Os12g05210Os.51775.1.S1_at11/1112+2311451..2312218expressed protein
LOC_Os12g05220OsAffx.31590.1.S1_at11/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.17852.2.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.11302.1.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05230Os.17313.1.S1_at11/1112+2317855..2320808ATP-dependent RNA helicase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7487.1.S1_at--210--3951Chr12:2300734..2300758 (25 bp)
CGGCAGCGGATCTGGTGTCCACGAT
LOC_Os12g05190
OsAffx.7487.1.S1_at--560--3391Chr12:2300731..2300755 (25 bp)
CAGCGGATCTGGTGTCCACGATGGT
LOC_Os12g05190
OsAffx.7487.1.S1_at--350--4711Chr12:2300677..2300701 (25 bp)
GCGGCGCGACGAACCTTTGTGGATA
LOC_Os12g05190
OsAffx.7487.1.S1_at--458--2631Chr12:2300666..2300690 (25 bp)
AACCTTTGTGGATAGCGGCGGCGAC
LOC_Os12g05190
OsAffx.7487.1.S1_at--219--1951Chr12:2300643..2300667 (25 bp)
ACGGCGCATCCAAGTGAGGGCAGCC
LOC_Os12g05190
OsAffx.7487.1.S1_at--340--3891Chr12:2300582..2300606 (25 bp)
CTGGGCCGAATCTAGCCGGGAAGCT
LOC_Os12g05190
OsAffx.7487.1.S1_at--811--7711Chr12:2300520..2300544 (25 bp)
GGTGGTGCGACAGCTAGGCAACTGA
LOC_Os12g05190
OsAffx.7487.1.S1_at--891--571Chr12:2300464..2300488 (25 bp)
ATGCGGCGTAGTGTCCGGGCGGCTA
LOC_Os12g05190
OsAffx.7487.1.S1_at--856--3611Chr12:2299861..2299885 (25 bp)
CTTGGGCCGGATTCGACTGGGAGGC
LOC_Os12g05190
OsAffx.7487.1.S1_at--952--5811Chr12:2299787..2299811 (25 bp)
GACCGGTGCTATGGCAGTCTTGTCA
LOC_Os12g05190
OsAffx.7487.1.S1_at--367--771Chr12:2299706..2299730 (25 bp)
ATGTGCCGCCGGTGTTAGATGGTGG
LOC_Os12g05190
Target Sequence 
CGGCAGCGGATCTGGTGTCCACGATGGTGGGGGCGGCGACAGCGGTCAGAGGCTCGGGCGGCGCGACGAACCTTTGTGGA
TAGCGGCGGCGACGGCGCATCCAAGTGAGGGCAGCCGCGGATCCGGCCCCCACGCGGCGGGATCCGGCCTCCCTGGGCCG
AATCTAGCCGGGAAGCTGCAGGGCCGGCGGCCGCGGCTGCACGACAACGGTGGTGGTGGTGCGACAGCTAGGCAACTGAG
GCTGGACGGCGTCGGTGTCGACGGCGCTGGATGCGGCGTAGTGTCCGGGCGGCTAGATGGCAGCGGTGGCGCCGGCACCC
TTGGGCCGGATTCGACTGGGAGGCCGGCGAGCGGCGTGGCGGAGGCAGCCTGGGTCAGCGCGCTGGCGGAGGTGACCGGT
GCTATGGCAGTCTTGTCATTGGCAGGACTGGAAGTCGGCCGGTGGAGGGGCGTAGGTCAGGTGTGGCGGAAGCCATGTGC
CGCCGGTGTTAGATGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis