Browse Element(s) Details


OsAffx.7490.1.S1_at

Description tigr:9640.m00465
TID=OsAffx.7490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=stellacyanin. (japanese lacquer tree, varnish tree
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0547011/11Plastocyanin-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05450Os.52238.1.S1_at7/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05450Os.49936.2.A1_at3/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05450Os.33601.3.S1_x_at1/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05450OsAffx.828.1.S1_x_at1/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05450OsAffx.15708.1.S1_at1/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05460NANA12+2500495..2502244transposon protein, putative, Mutator sub-class
LOC_Os12g05470OsAffx.7490.1.S1_at11/1112+2505940..2506512Plastocyanin-like domain containing protein
LOC_Os12g05480Os.51923.1.S1_at3/1112+2507911..2508183hypothetical protein
LOC_Os12g05490NANA12+2508934..2514637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05500OsAffx.1647.1.S1_at1/1112+2515221..2518171retrotransposon protein, putative, unclassified
LOC_Os12g05510OsAffx.19506.1.S1_at11/1112+2520695..2522452expressed protein
LOC_Os12g05520NANA12+2526840..2530920retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7490.1.S1_at--928--7711Chr12:2506012..2506036 (25 bp)
GGGTGGGACACGCAGACCAACCTCA
LOC_Os12g05470
OsAffx.7490.1.S1_at--794--7531Chr12:2506067..2506091 (25 bp)
GTGGCGACCAGCTCGTGTTCAGGTA
LOC_Os12g05470
OsAffx.7490.1.S1_at--378--8791Chr12:2506082..2506106 (25 bp)
TGTTCAGGTACGACGCGTCGGCGTA
LOC_Os12g05470
OsAffx.7490.1.S1_at--610--7691Chr12:2506132..2506156 (25 bp)
GGGTACCTCTCCTGCTCGGCGGCGA
LOC_Os12g05470
OsAffx.7490.1.S1_at--575--8351Chr12:2506381..2506405 (25 bp)
GGCGGCCCGCCGACGGTCATCATGA
LOC_Os12g05470
OsAffx.7490.1.S1_at--82--7131Chr12:2506396..2506420 (25 bp)
GTCATCATGACACCCGGCGTTATCT
LOC_Os12g05470
OsAffx.7490.1.S1_at--364--8371Chr12:2506411..2506435 (25 bp)
GGCGTTATCTCGTACGGCGCAGCGT
LOC_Os12g05470
OsAffx.7490.1.S1_at--471--4591Chr12:2506427..2506451 (25 bp)
GCGCAGCGTCGAGGTCTTCAGCAAA
LOC_Os12g05470
OsAffx.7490.1.S1_at--610--6151Chr12:2506437..2506461 (25 bp)
GAGGTCTTCAGCAAATCTCAGCTCC
LOC_Os12g05470
OsAffx.7490.1.S1_at--582--2271Chr12:2506449..2506473 (25 bp)
AAATCTCAGCTCCTCTCTACTTGTC
LOC_Os12g05470
OsAffx.7490.1.S1_at--735--3811Chr12:2506458..2506482 (25 bp)
CTCCTCTCTACTTGTCGCCATGGTG
LOC_Os12g05470
Target Sequence 
GGGTGGGACACGCAGACCAACCTCACCGCCTGGGCTTCCACCGTCGACCTCCGCCGTGGCGACCAGCTCGTGTTCAGGTA
CGACGCGTCGGCGTACGACGTCGTGGAGGTGACCCGCGCCGGGTACCTCTCCTGCTCGGCGGCGAGCCCCGTCTCCGCCG
CGCTCCGGACCGGCAACGACGTCGTCCGGCTCGACAGCGCCGCCGGGTGGCGCTACTTCATCTACGGCGTGGAGGGGCGC
TGCGCCGCCGGGATGAAGCTGCAGGTCAGGGTCACGGACGCCGGCGCCGGGTGCAACAACACGTTGCCGTCGCCGTCTCT
GGCGCCAGCGCCGCCCGGAGCGCCGTCGCCGGGCATCACCATCTGCTCCGGCGGCCCGCCGACGGTCATCATGACACCCG
GCGTTATCTCGTACGGCGCAGCGTCGAGGTCTTCAGCAAATCTCAGCTCCTCTCTACTTGTCGCCATGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis