Browse Element(s) Details


OsAffx.7527.1.S1_x_at

Description tigr:9640.m00793
TID=OsAffx.7527.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0856411/11expressed protein
LOC_Os06g402802/11retrotransposon protein, putative, unclassified
LOC_Os10g031901/11hypothetical protein
LOC_Os06g311501/11Transposable element protein, putative, Transposase_28
LOC_Os01g397401/11retrotransposon protein, putative, unclassified
LOC_Os12g286201/11retrotransposon protein, putative, unclassified
LOC_Os08g165201/11hypothetical protein
LOC_Os09g220201/11retrotransposon protein, putative, unclassified
LOC_Os02g174401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08500NANA12+4309820..4312490hypothetical protein
LOC_Os12g08510OsAffx.16451.1.A1_x_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08510OsAffx.22699.1.S1_x_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08510OsAffx.8279.1.S1_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08510Os.52731.1.S1_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08510OsAffx.7789.1.S1_x_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08520NANA12+4320513..4322774transposon protein, putative, Mutator sub-class
LOC_Os12g08530OsAffx.27108.2.S1_s_at11/1112+4323450..4324050GRF zinc finger family protein
LOC_Os12g08540NANA12+4329181..4329453hypothetical protein
LOC_Os12g08550Os.46707.1.A1_at2/1112+4335994..4336890hypothetical protein
LOC_Os12g08550Os.55601.1.S1_at1/1112+4335994..4336890hypothetical protein
LOC_Os12g08564Os.27520.8.S1_x_at11/1112+4336664..4353235expressed protein
LOC_Os12g08564OsAffx.7527.1.S1_x_at11/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.10255.1.S1_s_at9/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.46314.2.S1_x_at6/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.47114.1.S1_x_at3/1112+4336664..4353235expressed protein
LOC_Os12g08564OsAffx.22896.1.S1_x_at1/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.38269.1.S1_x_at1/1112+4336664..4353235expressed protein
LOC_Os12g08564OsAffx.26987.1.S1_at1/1112+4336664..4353235expressed protein
LOC_Os12g08564OsAffx.32036.1.S1_at1/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.51910.1.S1_x_at1/1112+4336664..4353235expressed protein
LOC_Os12g08580OsAffx.16318.1.S1_x_at1/1112+4354378..4355340retrotransposon protein, putative, unclassified
LOC_Os12g08590NANA12+4365579..4368331retrotransposon protein, putative, unclassified
LOC_Os12g08600NANA12+4372468..4373852retrotransposon protein, putative, unclassified
LOC_Os12g08610NANA12+4375208..4377532retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g08620NANA12+4377958..4382102retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7527.1.S1_x_at--977--5531Chr12:4352674..4352698 (25 bp)
GAAACTCGAGGTGGTGGAACTCAAA
LOC_Os12g08564
OsAffx.7527.1.S1_x_at--511--971Chr12:4352778..4352802 (25 bp)
AGGAGCTGTTGCACGTCGATGGCGA
LOC_Os12g08564
OsAffx.7527.1.S1_x_at--514--4211Chr12:4352951..4352975 (25 bp)
CCGCTATGCCAGAGGACATGTGCTA
LOC_Os12g08564
OsAffx.7527.1.S1_x_at--415--9994Chr12:4352974..4352998 (25 bp)
TAGCCTGCATCCGAGATCATCGTTC
LOC_Os12g08564
OsAffx.7527.1.S1_x_at--569--4233Chr12:4352984..4353008 (25 bp)
CCGAGATCATCGTTCGCAGCTGCAT
LOC_Os12g08564
OsAffx.7527.1.S1_x_at--722--10633Chr12:4352996..4353020 (25 bp)
TTCGCAGCTGCATCTCGAGTTCCTT
LOC_Os12g08564
OsAffx.7527.1.S1_x_at--888--6371Chr12:4353059..4353083 (25 bp)
GATCGACGGTCCTGCGGAGATCCGC
LOC_Os12g08564
OsAffx.7527.1.S1_x_at--905--6039Chr12:4353075..4353099 (25 bp)
GAGATCCGCTCCATGGATTGGCGTT
LOC_Os12g08564
OsAffx.7527.1.S1_x_at--463--10873Chr12:4353092..4353116 (25 bp)
TTGGCGTTGGCCGTCTGGTAGTTTT
LOC_Os12g08564
OsAffx.7527.1.S1_x_at--1122--8412Chr12:4353100..4353124 (25 bp)
GGCCGTCTGGTAGTTTTTGTATTAT
LOC_Os12g08564
OsAffx.7527.1.S1_x_at--89--4510Chr12:4353135..4353159 (25 bp)
ATCTCAAGGAAGCATGTAATATACT
LOC_Os12g08564
Target Sequence 
GAAACTCGAGGTGGTGGAACTCAAAAAAATCATGGTGCAGGTGAAGAAGGACCAGGCCATGGAAGCTCTCCGGGGGTCAC
GAGGTGTGGTTCAACTCGTACCTCAGGAGCTGTTGCACGTCGATGGCGAGGGTTTGCATGGAGCTCTGAGTTCCCCGCGA
AGATCCCGAGGAGTCGGCGGCTGGTTATATCTCGTGGTTGAATGAGGCTTGCGCACAGCTCGAAGGGATTGGCCAGCGCA
TCGACGATGCCCTGAAGCAGGAGTGTCGTCGAGCGAGCCGCTATGCCAGAGGACATGTGCTAGCCTGCATCCGAGATCAT
CGTTCGCAGCTGCATCTCGAGTTCCTTCGCGAAGGGTTCTCGCGTTCTCGGAGGACACCTGCGGAGATCGACGGTCCTGC
GGAGATCCGCTCCATGGATTGGCGTTGGCCGTCTGGTAGTTTTTGTATTATGTAGAAAAATATCTCAAGGAAGCATGTAA
TATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7527.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis