Browse Element(s) Details


OsAffx.7533.1.S1_x_at

Description tigr:9640.m00842
TID=OsAffx.7533.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g113201/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g297501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11290OsAffx.10596.1.S1_x_at1/1111+6245642..6251771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11300NANA11+6265679..6269335retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11310NANA11+6270916..6271251hypothetical protein
LOC_Os11g11320Os.16593.1.S1_at11/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11320OsAffx.7533.1.S1_x_at1/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11320OsAffx.7533.1.S1_at1/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11330Os.52702.1.S1_at11/1111+6281233..6283457expressed protein
LOC_Os11g11330Os.36607.2.S1_x_at1/1111+6281233..6283457expressed protein
LOC_Os11g11330OsAffx.27750.1.S1_x_at1/1111+6281233..6283457expressed protein
LOC_Os11g11340Os.7334.1.A1_at11/1111+6284373..6290628ATPase, AAA family protein, expressed
LOC_Os11g11340Os.56263.1.S1_at11/1111+6284373..6290628ATPase, AAA family protein, expressed
LOC_Os11g11350OsAffx.7076.1.S1_at11/1111+6292017..6296343expressed protein
LOC_Os11g11360OsAffx.30927.1.S1_at11/1111+6302316..6303143embryogenesis transmembrane protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7533.1.S1_x_at--162--3511Chr12:4722413..4722437 (25 bp)
CATAGAGGCCCATCAACGGTGGTGT
NONE
OsAffx.7533.1.S1_x_at--61--8931Chr12:4722437..4722461 (25 bp)
TGACCAACCAATCGTGAATGCGATG
NONE
OsAffx.7533.1.S1_x_at--645--7355Chr12:4722450..4722474 (25 bp)
GTGAATGCGATGACACCAGTCGGCG
NONE
OsAffx.7533.1.S1_x_at--1023--931Chr12:4722482..4722506 (25 bp)
AGGCAAGCCGACGTTGAAGATGTAT
NONE
OsAffx.7533.1.S1_x_at--440--4231Chr12:4722489..4722513 (25 bp)
CCGACGTTGAAGATGTATGTGCCCA
NONE
OsAffx.7533.1.S1_x_at--970--6651Chr12:4722494..4722518 (25 bp)
GTTGAAGATGTATGTGCCCATCGAT
NONE
OsAffx.7533.1.S1_x_at--909--7291Chr12:4722507..4722531 (25 bp)
GTGCCCATCGATGGCGGTGTGACCA
NONE
OsAffx.7533.1.S1_x_at--629--6231Chr12:4722516..4722540 (25 bp)
GATGGCGGTGTGACCAACCAGCCGT
NONE
OsAffx.7533.1.S1_x_at--280--26510Chr12:4722531..4722551 (21 bp)
AACCAGCCGTGTAGGCGAAGGCCAG
NONE
OsAffx.7533.1.S1_x_at--128--4152Chr12:4722774..4722798 (25 bp)
CGCCCAACAACGACGGTATAATAGA
NONE
OsAffx.7533.1.S1_x_at--420--5751Chr12:4722785..4722809 (25 bp)
GACGGTATAATAGACCAGCCGTGCA
NONE
Target Sequence 
CATAGAGGCCCATCAACGGTGGTGTGACCAACCAATCGTGAATGCGATGACACCAGTCGGCGGTGACGGAGGCAAGCCGA
CGTTGAAGATGTATGTGCCCATCGATGGCGGTGTGACCAACCAGCCGTGTAGGCGAAGGCCAGCCGTGCAGGCGAAAACA
TCAGTCGGTGGCGGTGAAGGCAAGCCGGTCGGTAAAGACGTAGACGCCCAACAACGACGGTATAATAGACCAGCCGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7533.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis