Browse Element(s) Details


OsAffx.7578.1.S1_at

Description tigr:9640.m01284
TID=OsAffx.7578.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g062305/11hypothetical protein
LOC_Os05g045601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06180OsAffx.7498.1.S1_at11/1112+2930759..2933408HVA22-like protein j, putative, expressed
LOC_Os12g06190OsAffx.31611.1.S1_s_at11/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.19151.1.S1_at1/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.6844.1.S1_x_at1/1112+2933608..2934619expressed protein
LOC_Os12g06200Os.424.1.S1_at11/1112+2938696..2944050Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os12g06210OsAffx.19519.1.S1_at11/1112+2946868..2947542Harpin-induced protein 1 containing protein
LOC_Os12g06220Os.5354.1.S1_at11/1112+2949703..2950593Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06230OsAffx.7499.1.S1_at11/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.12219.1.A1_at10/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.7578.1.S1_at5/1112+2952126..2965407hypothetical protein
LOC_Os12g06240OsAffx.31612.1.S1_at10/1112+2966582..2967203hypothetical protein
LOC_Os12g06250Os.54124.1.S1_at11/1112+2969930..2973161expressed protein
LOC_Os12g06250Os.54124.1.S2_at11/1112+2969930..2973161expressed protein
LOC_Os12g06260Os.9526.1.S1_at11/1112+2978506..2979852Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06270Os.48434.1.A1_at2/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06270OsAffx.9699.1.S1_at1/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7578.1.S1_at--432--5991Chr12:7385825..7386296 (25 bp)
GAGACGAAGTCTCTCTGTGATTCGC
NONE
OsAffx.7578.1.S1_at--1089--1151Chr12:7386279..7386303 (25 bp)
AGTCTCTCTGTGATTCGCAGTGCCA
NONE
OsAffx.7578.1.S1_at--23--10633Chr12:7386336..7386360 (25 bp)
TTCGTTGTTGAACGCGGCCGCTTGC
NONE
OsAffx.7578.1.S1_at--665--6753Chr12:7386369..7386393 (25 bp)
TCTTCCCTTGGTGTCGTACCTTTGG
NONE
OsAffx.7578.1.S1_at--808--4052Chr12:7386405..7386429 (25 bp)
CGATGGTGTCTTGCTAGCTGGCGTA
NONE
OsAffx.7578.1.S1_at--902--3712Chr12:7386418..7386442 (25 bp)
CTAGCTGGCGTAGAGCTTGCTCTGC
NONE
OsAffx.7578.1.S1_at--525--1152Chr12:7386444..7386468 (25 bp)
AGTCGAGGCGCCCAGTTGCGATACA
NONE
OsAffx.7578.1.S1_at--535--1231Chr12:7386457..7386918 (25 bp)
AGTTGCGATACAGGCCTCTACAAAC
NONE
OsAffx.7578.1.S1_at--821--872Chr12:7386906..7386929 (24 bp)
AGGCCTCTACAAACTGCAATATTCT
NONE
OsAffx.7578.1.S1_at--248--332Chr12:7386972..7387413 (25 bp)
ATAACATAAAATCGGCGGAGGCCTG
NONE
OsAffx.7578.1.S1_at--965--1251NONE
AGATTCATTCGCAGGATTTTATGGC
NONE
Target Sequence 
GAGACGAAGTCTCTCTGTGATTCGCAGTGCCAGGCGGGATGGTCGCGGTTGGGGTTTCCTTCGTTTCGTTGTTGAACGCG
GCCGCTTGCCATTGCCGTCTTCCCTTGGTGTCGTACCTTTGGGAGCTGGATGGCGATGGTGTCTTGCTAGCTGGCGTAGA
GCTTGCTCTGCCAGTCGAGGCGCCCAGTTGCGATACAGGCCTCTACAAACTGCAATATTCTATGCAAAGAAGAGAAAAAT
CGAAAAAGAGGGGCACGCTCTGAATAACATAAAATCGGCGGAGGCCTGCAACAACAACGGCCGCGCGGGCGAGCAATCGA
GGAGGCCGGGAATCACCAGATCCGGAAGGACGGCGGCCCGATTCGGAGAGGGAGCAACCCGATCTGTGTCATTGAGGCTC
ATTACCAATGAAAATGGTGATGGTCTATCGTGCAAATTGATGAAGGGATTGGGAGCAGATTCATTCGCAGGATTTTATGG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis