Browse Element(s) Details


OsAffx.7675.1.S1_at

Description tigr:9640.m02227
TID=OsAffx.7675.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2345011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23400NANA12+13237764..13238846hypothetical protein
LOC_Os12g23420OsAffx.31869.4.S1_x_at9/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.4.S1_at9/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.3.S1_x_at5/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.3.S1_s_at4/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.3.S1_at3/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.5.S1_x_at3/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23430OsAffx.29789.1.S1_x_at11/1112+13243449..13245516hAT family dimerisation domain containing protein
LOC_Os12g23430OsAffx.29789.3.S1_x_at1/1112+13243449..13245516hAT family dimerisation domain containing protein
LOC_Os12g23430OsAffx.31885.2.S1_x_at1/1112+13243449..13245516hAT family dimerisation domain containing protein
LOC_Os12g23440NANA12+13251441..13258028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23450OsAffx.7675.1.S1_at11/1112+13263083..13265482hypothetical protein
LOC_Os12g23460Os.50549.1.S1_at11/1112+13267650..13269173expressed protein
LOC_Os12g23460OsAffx.24340.1.S1_at1/1112+13267650..13269173expressed protein
LOC_Os12g23460OsAffx.27496.2.S1_x_at1/1112+13267650..13269173expressed protein
LOC_Os12g23470OsAffx.5075.1.S1_x_at1/1112+13270244..13271714retrotransposon protein, putative, unclassified
LOC_Os12g23480NANA12+13273350..13274543retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23490OsAffx.19056.1.S1_at1/1112+13279200..13283186retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23500Os.10731.1.A1_a_at8/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500OsAffx.31869.5.S1_x_at3/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500Os.38764.1.S1_x_at2/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500OsAffx.31869.4.S1_x_at2/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500OsAffx.31869.4.S1_at1/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500Os.45173.1.S1_x_at1/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23510OsAffx.31848.1.S1_x_at11/1112+13290225..13291355hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7675.1.S1_at--406--6091Chr12:13263849..13263873 (25 bp)
GAGTCAGGAACGAGCTCTACTTCAA
LOC_Os12g23450
OsAffx.7675.1.S1_at--435--8551Chr12:13263927..13263951 (25 bp)
TGGAGTCCCGAGACGAGCTGCTCAT
LOC_Os12g23450
OsAffx.7675.1.S1_at--200--7111Chr12:13263956..13264124 (25 bp)
GTCAGGTTGGGTACCCTTGAGCACT
LOC_Os12g23450
OsAffx.7675.1.S1_at--980--10751Chr12:13264116..13264140 (25 bp)
TTGAGCACTCCTGGATCAAGCTGGC
LOC_Os12g23450
OsAffx.7675.1.S1_at--1126--9931Chr12:13264253..13264277 (25 bp)
TACGACCGGACGACCGTGTTCAAGA
LOC_Os12g23450
OsAffx.7675.1.S1_at--190--2311Chr12:13264287..13264311 (25 bp)
AAAGGAAGTATCACCGCAGCGACAT
LOC_Os12g23450
OsAffx.7675.1.S1_at--386--7191Chr12:13264321..13264345 (25 bp)
GTCGGGATCACCACCGCAGGTCAGG
LOC_Os12g23450
OsAffx.7675.1.S1_at--353--7791Chr12:13264339..13264363 (25 bp)
GGTCAGGCACTGCTTACCGGAGCAA
LOC_Os12g23450
OsAffx.7675.1.S1_at--587--5951Chr12:13265027..13265046 (20 bp)
GAGCAAGTCCTAAATCATGTGCACA
LOC_Os12g23450
OsAffx.7675.1.S1_at--1074--6011Chr12:13265071..13265093 (23 bp)
GAGAGTTTGATGGTATTGCGCTGAA
LOC_Os12g23450
OsAffx.7675.1.S1_at--294--6151Chr12:13265390..13265414 (25 bp)
GAGGTTCTTGGCTCAAATGCAAAAC
LOC_Os12g23450
Target Sequence 
GAGTCAGGAACGAGCTCTACTTCAAGCCGCGCGGCGACGACGGCGGCGGCGGCCGGCCGGTCCTTGCTCGCTACCTCGTG
GAGTCCCGAGACGAGCTGCTCATGGTCGTCAGGTTGGGTACCCTTGAGCACTCCTGGATCAAGCTGGCCGACCTTGGCGG
CCGCATGCTGTTCGTCGGGAGAGGCTGCTCCAGATCCTACGAAGCGGCGGATGGGTACCCCGGCATGGAGGGAGTCTACT
TCCTGGATGACCGGAGCTTCTACGACCGGACGACCGTGTTCAAGAATGACGACAAAAGGAAGTATCACCGCAGCGACATC
GGGAAATGGTCGGGATCACCACCGCAGGTCAGGCACTGCTTACCGGAGCAAGTCCTAAATCATGTGCACAATGAGGCTGA
TCGAGTGGCTGATAGAGAGTTTGATGGTATTGCGCTGAACATTGAGGTTCTTGGCTCAAATGCAAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis