Browse Element(s) Details


OsAffx.7681.1.S1_at

Description tigr:9640.m02273
TID=OsAffx.7681.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2390011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23849NANA12+13562606..13563289NA
LOC_Os12g23860OsAffx.19790.1.S1_at11/1112+13569909..13570430hypothetical protein
LOC_Os12g23860Os.39814.1.S1_at1/1112+13569909..13570430hypothetical protein
LOC_Os12g23869OsAffx.16314.1.S1_at1/1112+13574084..13574766hypothetical protein
LOC_Os12g23880OsAffx.10439.1.S1_at1/1112+13575140..13577488transposon protein, putative, Mutator sub-class
LOC_Os12g23880Os.10731.2.A1_at1/1112+13575140..13577488transposon protein, putative, Mutator sub-class
LOC_Os12g23890OsAffx.7680.1.S1_at11/1112+13579956..13580287expressed protein
LOC_Os12g23900OsAffx.7681.1.S1_at11/1112+13584799..13585449hypothetical protein
LOC_Os12g23910NANA12+13587197..13590159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23920NANA12+13590476..13596565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23930OsAffx.31853.1.S1_at11/1112+13597179..13598474Protein kinase domain containing protein
LOC_Os12g23940OsAffx.19791.1.S1_at11/1112+13600373..13601551Protein kinase domain containing protein, expressed
LOC_Os12g23950OsAffx.19792.1.S1_at11/1112+13607703..13608806Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7681.1.S1_at--636--9611Chr12:13585079..13585103 (25 bp)
TCATCCCTAGTGGTGTGGATGCCGC
LOC_Os12g23900
OsAffx.7681.1.S1_at--290--2211Chr12:13584992..13585016 (25 bp)
ACAAGTCTACGACACTTAAGGACGT
LOC_Os12g23900
OsAffx.7681.1.S1_at--490--9911Chr12:13584985..13585009 (25 bp)
TACGACACTTAAGGACGTGGTGGGC
LOC_Os12g23900
OsAffx.7681.1.S1_at--1002--951Chr12:13584917..13584941 (25 bp)
AGGACGCCGACAAGGTGGCAACCGC
LOC_Os12g23900
OsAffx.7681.1.S1_at--906--8391Chr12:13584889..13584913 (25 bp)
GGCGCAGAACGATCAGAGCCGATTA
LOC_Os12g23900
OsAffx.7681.1.S1_at--352--5871Chr12:13584874..13584898 (25 bp)
GAGCCGATTAGAAATCCAATCCCGC
LOC_Os12g23900
OsAffx.7681.1.S1_at--1037--131Chr12:13584868..13584892 (25 bp)
ATTAGAAATCCAATCCCGCATCGTC
LOC_Os12g23900
OsAffx.7681.1.S1_at--974--3011Chr12:13584862..13584886 (25 bp)
AATCCAATCCCGCATCGTCTGGATG
LOC_Os12g23900
OsAffx.7681.1.S1_at--92--3551Chr12:13584850..13584874 (25 bp)
CATCGTCTGGATGCGTTTTTCTTTT
LOC_Os12g23900
OsAffx.7681.1.S1_at--1109--6331Chr12:13584841..13584865 (25 bp)
GATGCGTTTTTCTTTTCCACGAGGA
LOC_Os12g23900
OsAffx.7681.1.S1_at--361--10391Chr12:13584829..13584853 (25 bp)
TTTTCCACGAGGAAAGCAATCACCG
LOC_Os12g23900
Target Sequence 
TCATCCCTAGTGGTGTGGATGCCGCGGCGCAGCAGGCCGTCGAGGCGAACATGAGGCACCGCCCCGATGCCGACGGGGAG
AAAATTAACAAGTCTACGACACTTAAGGACGTGGTGGGCGGCGCTACGGAGGTGCTCCCGGCGAACAAGGTGACCCCCAG
GGAGGACGCCGACAAGGTGGCAACCGCCGCGGCGCAGAACGATCAGAGCCGATTAGAAATCCAATCCCGCATCGTCTGGA
TGCGTTTTTCTTTTCCACGAGGAAAGCAATCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis