Browse Element(s) Details


OsAffx.7772.1.S1_at

Description tigr:9640.m03203
TID=OsAffx.7772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3291011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32870OsAffx.31994.1.S1_at11/1112+19836837..19839307hypothetical protein
LOC_Os12g32880OsAffx.31995.1.S1_at11/1112+19842756..19844036hypothetical protein
LOC_Os12g32890OsAffx.19941.1.S1_at10/1112+19848235..19849516hypothetical protein
LOC_Os12g32900OsAffx.19942.1.S1_at11/1112+19851101..19852384hypothetical protein
LOC_Os12g32910OsAffx.7772.1.S1_at11/1112+19856619..19857178hypothetical protein
LOC_Os12g32910OsAffx.22011.1.S1_at1/1112+19856619..19857178hypothetical protein
LOC_Os12g32920OsAffx.19943.1.S1_at11/1112+19860887..19864734hypothetical protein
LOC_Os12g32930OsAffx.24546.1.S1_at9/1112+19865970..19867224hypothetical protein
LOC_Os12g32930Os.55390.1.S1_x_at4/1112+19865970..19867224hypothetical protein
LOC_Os12g32930OsAffx.12334.2.S1_at2/1112+19865970..19867224hypothetical protein
LOC_Os12g32940Os.27833.1.S1_at11/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940Os.46622.1.S1_x_at4/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.2.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.1.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32950Os.12382.1.S1_at2/1112+19876146..19877802Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os12g32960OsAffx.31996.1.S1_x_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32960OsAffx.31996.1.S1_at11/1112+19879535..19880014hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7772.1.S1_at--859--6011Chr12:19857124..19857148 (25 bp)
GAGAGTGGTGGATCCAACACCGCCA
LOC_Os12g32910
OsAffx.7772.1.S1_at--777--1331Chr12:19857123..19857147 (25 bp)
AGAGTGGTGGATCCAACACCGCCAC
LOC_Os12g32910
OsAffx.7772.1.S1_at--1136--6111Chr12:19857122..19857146 (25 bp)
GAGTGGTGGATCCAACACCGCCACC
LOC_Os12g32910
OsAffx.7772.1.S1_at--848--7571Chr12:19857089..19857113 (25 bp)
GGGCGGATCTATTGTCCTCGGCCTC
LOC_Os12g32910
OsAffx.7772.1.S1_at--836--4671Chr12:19857087..19857111 (25 bp)
GCGGATCTATTGTCCTCGGCCTCGG
LOC_Os12g32910
OsAffx.7772.1.S1_at--212--3971Chr12:19857086..19857110 (25 bp)
CGGATCTATTGTCCTCGGCCTCGGT
LOC_Os12g32910
OsAffx.7772.1.S1_at--1118--7951Chr12:19857085..19857109 (25 bp)
GGATCTATTGTCCTCGGCCTCGGTA
LOC_Os12g32910
OsAffx.7772.1.S1_at--304--6411Chr12:19857084..19857108 (25 bp)
GATCTATTGTCCTCGGCCTCGGTAG
LOC_Os12g32910
OsAffx.7772.1.S1_at--51--451Chr12:19857083..19857107 (25 bp)
ATCTATTGTCCTCGGCCTCGGTAGG
LOC_Os12g32910
OsAffx.7772.1.S1_at--92--9531Chr12:19857082..19857106 (25 bp)
TCTATTGTCCTCGGCCTCGGTAGGG
LOC_Os12g32910
OsAffx.7772.1.S1_at--388--8871Chr12:19856649..19857074 (25 bp)
TGATGGGGAGCGTGTATCCAAGCGC
LOC_Os12g32910
Target Sequence 
GAGAGTGGTGGATCCAACACCGCCACCATCGGGAGGGGCGGATCTATTGTCCTCGGCCTCGGTAGGGGCGATGATGATGG
GGAGCGTGTATCCAAGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis