Browse Element(s) Details


OsAffx.7809.1.S1_at

Description tigr:9640.m03521
TID=OsAffx.7809.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3635011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36310OsAffx.7807.1.S1_at11/1112+22196436..22199755expressed protein
LOC_Os12g36310Os.55356.1.S1_x_at1/1112+22196436..22199755expressed protein
LOC_Os12g36310Os.55356.1.S1_at1/1112+22196436..22199755expressed protein
LOC_Os12g36320OsAffx.32054.1.S1_at11/1112+22204348..22205725hypothetical protein
LOC_Os12g36330OsAffx.19985.1.S1_at11/1112+22211311..22213339hypothetical protein
LOC_Os12g36340NANA12+22215017..22216003hypothetical protein
LOC_Os12g36350OsAffx.7809.1.S1_at11/1112+22218928..22221282hypothetical protein
LOC_Os12g36360Os.46610.1.S1_x_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36360OsAffx.22143.1.S1_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36360Os.11220.1.S1_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36360Os.53292.1.S1_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36370Os.40855.2.S1_x_at7/1112+22234810..22235982hypothetical protein
LOC_Os12g36370Os.40360.1.S1_x_at1/1112+22234810..22235982hypothetical protein
LOC_Os12g36380NANA12+22236585..22239727hypothetical protein
LOC_Os12g36390OsAffx.26555.1.S1_at3/1112+22244090..22247878retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7809.1.S1_at--630--4591Chr12:22220652..22220676 (25 bp)
GCGAAGGTGCCGTTGCTACGAAAGA
LOC_Os12g36350
OsAffx.7809.1.S1_at--48--6531Chr12:22220795..22220819 (25 bp)
GATTTGGCTCAACTTGCTAATGCAA
LOC_Os12g36350
OsAffx.7809.1.S1_at--574--111Chr12:22220832..22220856 (25 bp)
ATTCTGCATCTAGCTTTGCCGGGAA
LOC_Os12g36350
OsAffx.7809.1.S1_at--595--931Chr12:22220956..22220980 (25 bp)
AGGAAACTACCCCAAAGCAGAGCTG
LOC_Os12g36350
OsAffx.7809.1.S1_at--1025--5231Chr12:22220993..22221017 (25 bp)
GAATCTCTGTCCAAGGCTTCCAAAG
LOC_Os12g36350
OsAffx.7809.1.S1_at--160--6291Chr12:22221043..22221067 (25 bp)
GATGTTCTCTAGCAGCGACCAGAGC
LOC_Os12g36350
OsAffx.7809.1.S1_at--524--5851Chr12:22221059..22221083 (25 bp)
GACCAGAGCGCAATGAATCCAGTAA
LOC_Os12g36350
OsAffx.7809.1.S1_at--656--3031Chr12:22221074..22221098 (25 bp)
AATCCAGTAAGCATTCTCGGTTCTC
LOC_Os12g36350
OsAffx.7809.1.S1_at--895--2451Chr12:22221105..22221129 (25 bp)
AACAAGCACAGGTCCTTCTGGAGAA
LOC_Os12g36350
OsAffx.7809.1.S1_at--442--8231Chr12:22221148..22221169 (22 bp)
GGCAACCACAGCAACTAGCACTAAT
LOC_Os12g36350
OsAffx.7809.1.S1_at--281--5111Chr12:22221165..22221251 (25 bp)
GCACTAATGCAGACCGTTGGCGATC
LOC_Os12g36350
Target Sequence 
GCGAAGGTGCCGTTGCTACGAAAGATAGTGGCAACGTCAATGAGCAAAAGGACGACAACAAGAAAATCGTGGACAGGAAA
CTACATGCAGCTTTACTGTCACTTAGTGCGGCAATATTTGAAAAATTGATCAGTAATGATACAGATTTGGCTCAACTTGC
TAATGCAATTGCAACAGGAGATTCTGCATCTAGCTTTGCCGGGAAGCTCAAGAAGTTGGTAGAAGAAAACAGTGAACCAA
CAGCCAATTGCCTGAGAATACTGAAGATTGCCAGTAGGATGATCATATCACTGATAAATCTCGAAGGAAACTACCCCAAA
GCAGAGCTGGAGAGCTTGATGGAATCTCTGTCCAAGGCTTCCAAAGAGATGTTTGAACTGGAAGCGTTCATGATGTTCTC
TAGCAGCGACCAGAGCGCAATGAATCCAGTAAGCATTCTCGGTTCTCAAGTGAAACAAGCACAGGTCCTTCTGGAGAATA
AGAAGGAACAAAATGTGGCAACCACAGCAACTAGCACTAATGCAGACCGTTGGCGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis